Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000442g0004 ATGGGGCATGGCCGAGGCCCGCACCTTTCCGAGGCTGTGACCCGCTGTCCGCAGTTTTCAGCAGCGCTAGACTGGCCGGCGAGACGGCCAGGCTGGTCCTGTCGACGGGTCCGGCCTCGCCCTCTCGTCGCGTCGCGGACTAGGCTGATGCGTGGTGACAATCTCCAGTGTTCGCGGAGCAAAGGGCTGGTTACTGGTGTTTATGGCACACCAGGCCTCCGAGTAGCGATTCCTACTTCATTTGGAAAAAGATTAGTACTTCATTTGGAAAAAGATAGTCTGACTGAGTGCGAGTCCCATTCTGCCGTGCCACGTCGTGCAAGTGTTGGCATTGCAGGTTATCCTCATAACTGGGTAAAATTTCAGAAAAACATTTCAAATTCCAGCAAGCAGAGGTCTCTGACGCTCATCCAGCCCGCCGCGCCGCTGCCGGGTCAATTTTGTCTTGAGTACCGCAACCTCTTCTATAATATCCCCCCATTTTGTAATGATGGTTCACTGTTTCGTTCGCAGGCCGAAGCAATGCCGCCCGAACGCTCTTCGGCAGCCTCCGAGAAGCCCAAGAAGAAGTGTAGCCGCCCGCGAGGCGAGCGGCTGTGCACTATGTGCGGCAAGGAGTGCGCCGCGCCCAATGCGCTGAAAGTCCACATTCGATCCCACACGGGAGAGAAACCCTACGAGTGTCCGATTTGCCTCAGGGCTTTCAGTGGAAGTGACAACCTGAAGAAGCACGTCCTGACGCACTCAGGACAGAAGAAATTTGAGTGCACTGTGTGTGGGAAGAAGTTCAGTGCCAATAACAGTCTGAGGATGCACCAGCGGACGCATACTGGAGAGAAGCCGTTCGAGTGCGTGGTCTGCGGGAAGAGGTTCTCTCAGAAGGTCAACCTGGAGTCTCACCAGCTGGTGCACTCGAAGGAGAAGCCCCACGGCTGCACTGAGTGCCCCAAGCACTTCAGGAGGATGCACCACCTGCAGGCGCACTTGCTTACGCACACCGGCGAGAAACCATTCGGCTGCACTCAGTGCTCGCAACGGTTCTTTTCGTGTAGCAACCTAAAAACACACTTGCTGAGCCACACTGGCGAAAAGCCCTTCGCCTGCTCGGAGTGCCCGAAGGGCTTTACCACGAACTTTGCTCTCACGATACACCTCCGGACGCACACTGGAGAAAAACCCTTCGCCTGCACTGTGTGTCCGATGCGCTTCGTTTCAAAGGGTGATATGCAACGTCACATCATGCGCAAGCACACCACAGCAGAGAAAACATATCAGTGCACGCTGTGCCCTCAACGGTTCGGCGAGAGTGGCAATCTTCGGAAACACCTACTGACGCACACCGATGAGAAGCCGTTCAACTGCTCTGTCTGCTCGAAGCGCTTCAGGCGCACCGGTCACCTCAAGGAACACCTCCGCACGCACCAGGACCAGGACACTCCTCCTGATGAAAGGTCCTACCCATGCACGCAGTGCCCCAAGCGCTTCTATGGGTCGTGGAACCTCAAGATCCACCTTCGCACGCACACCGGGGAGAAGCCTTTCGGCTGCCCGGTGTGCCCCAAGCGCTTCACGGTGAGCAGCAGTCTCAAGTCTCACCTTCGCACGCATACCGGTGAGAAGCCGTTCGGCTGCACGGAGTGCCCCAAGCGCTTCACCTATGACTCAGGCCTCAAGACCCACCTCCGCACGCACACCGGGGCGAAGCCGTTCGGCTGCACGGAGTGCCCCAAGCGCTTCACCTATGACTCAGGCCTCAAGACCCACCTCCTCACGCACACCGGAGAGAAGCCTTTCGGCTGCACGGAGTGCCCCAAGCGCTTCACGTCGAGTAGCTACCTCCAGACTCACCTTCTCACGCACACGGGAGAGAAGCCGTTCGGTTGCCCGGAGTGCCCTATGCGCTTCAACCAAGCCAGTAATTTGAGGACACACTTTTCGCGCAAGCACGCTCGCACCGGGGGGAAGTCGTATCGCTGTACTGAGTGCAACAAGACGTTCACTCGTGCGCCTCAACTGCGGCAACATCTTCGCGCTCATATCGAGCGAGACGACGAAGAGCGCGTGGAAACTTAG 2073 0.576 MGHGRGPHLSEAVTRCPQFSAALDWPARRPGWSCRRVRPRPLVASRTRLMRGDNLQCSRSKGLVTGVYGTPGLRVAIPTSFGKRLVLHLEKDSLTECESHSAVPRRASVGIAGYPHNWVKFQKNISNSSKQRSLTLIQPAAPLPGQFCLEYRNLFYNIPPFCNDGSLFRSQAEAMPPERSSAASEKPKKKCSRPRGERLCTMCGKECAAPNALKVHIRSHTGEKPYECPICLRAFSGSDNLKKHVLTHSGQKKFECTVCGKKFSANNSLRMHQRTHTGEKPFECVVCGKRFSQKVNLESHQLVHSKEKPHGCTECPKHFRRMHHLQAHLLTHTGEKPFGCTQCSQRFFSCSNLKTHLLSHTGEKPFACSECPKGFTTNFALTIHLRTHTGEKPFACTVCPMRFVSKGDMQRHIMRKHTTAEKTYQCTLCPQRFGESGNLRKHLLTHTDEKPFNCSVCSKRFRRTGHLKEHLRTHQDQDTPPDERSYPCTQCPKRFYGSWNLKIHLRTHTGEKPFGCPVCPKRFTVSSSLKSHLRTHTGEKPFGCTECPKRFTYDSGLKTHLRTHTGAKPFGCTECPKRFTYDSGLKTHLLTHTGEKPFGCTECPKRFTSSSYLQTHLLTHTGEKPFGCPECPMRFNQASNLRTHFSRKHARTGGKSYRCTECNKTFTRAPQLRQHLRAHIERDDEERVET 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 426 446 IPR013087 -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 319 375 IPR036236 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 277 307 - -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 417 447 - -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 511 538 - -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 224 253 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 366 393 IPR013087 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 454 474 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 162 223 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 570 597 IPR013087 -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 592 644 IPR036236 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 648 680 IPR036236 -
Alju1000442g0004 690 FunFam zinc finger protein 697 447 474 - -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 479 510 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 516 536 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 448 478 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 452 479 IPR013087 -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 337 IPR013087 -
Alju1000442g0004 690 FunFam Zinc finger protein 33A 564 595 - -
Alju1000442g0004 690 FunFam Zinc finger protein 660 537 563 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 542 569 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 649 690 - -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 659 679 IPR013087 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Alju1000442g0004 690 FunFam Zinc finger protein 622 649 - -
Alju1000442g0004 690 PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING 196 347 - -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 600 620 IPR013087 -
Alju1000442g0004 690 FunFam Zinc finger protein 33A 207 251 - -
Alju1000442g0004 690 FunFam Zinc finger 45-like 419 446 - -
Alju1000442g0004 690 FunFam Zinc finger protein 26 652 680 - -
Alju1000442g0004 690 FunFam Zinc finger protein 560 482 509 - -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 389 416 - -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 621 648 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Alju1000442g0004 690 FunFam zinc finger protein 16 596 621 - -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 495 551 IPR036236 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 284 304 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 308 335 - -
Alju1000442g0004 690 FunFam Zinc finger protein 33A 274 307 - -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 211 263 IPR036236 -
Alju1000442g0004 690 SMART c2h2final6 310 332 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 338 360 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 282 304 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 570 592 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 452 474 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 626 649 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 366 388 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 254 276 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 226 248 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 542 564 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 514 536 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 198 220 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 598 620 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 486 508 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 424 446 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 394 417 IPR013087 -
Alju1000442g0004 690 SMART c2h2final6 657 679 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 657 679 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 486 508 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 366 388 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 200 220 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 544 564 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 254 276 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 600 620 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 394 417 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 628 649 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 452 474 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 226 248 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 516 536 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 282 304 IPR013087 -
Alju1000442g0004 690 Pfam Zinc finger, C2H2 type 424 446 IPR013087 -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 551 607 IPR036236 -
Alju1000442g0004 690 FunFam Zinc finger and SCAN domain-containing protein 2 252 273 - -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 572 592 IPR013087 -
Alju1000442g0004 690 FunFam Zinc finger protein 560 362 390 - -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 368 388 IPR013087 -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 626 656 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 539 566 - -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 336 361 - -
Alju1000442g0004 690 FunFam Zinc finger protein 391 418 - -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 360 412 IPR036236 -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 657 684 IPR013087 -
Alju1000442g0004 690 FunFam ZFP69 zinc finger protein B 308 333 - -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 544 564 IPR013087 -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 263 319 IPR036236 -
Alju1000442g0004 690 SUPERFAMILY beta-beta-alpha zinc fingers 422 474 IPR036236 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 340 360 IPR013087 -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 309 IPR013087 -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 424 451 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 594 620 - -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 567 593 - -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 396 417 IPR013087 -
Alju1000442g0004 690 FunFam Zinc finger 45-like 334 361 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 338 365 IPR013087 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 312 332 IPR013087 -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 486 513 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 254 276 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 394 422 IPR013087 -
Alju1000442g0004 690 ProSitePatterns Zinc finger C2H2 type domain signature. 488 508 IPR013087 -
Alju1000442g0004 690 MobiDBLite consensus disorder prediction 173 195 - -
Alju1000442g0004 690 FunFam PR domain zinc finger protein 14 510 536 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 598 625 IPR013087 -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 514 541 IPR013087 -
Alju1000442g0004 690 Gene3D Classic Zinc Finger 362 388 - -
Alju1000442g0004 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000442g0004 491 649 C2H2 Transcription Factor Family AT4G06634 28.814 4.66e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju1000442g0004 zf-C2H2 0.003 CL0361