Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000414g0006 ATGTTTTTGTCTCGTTTGTTGCTATGTATTCATGACTTGAAATTTACCTCCCAACAGCTTGAAGAGGGCTCTAGAGTAATCGATTACAACATAAATTTGAATGACGTGGTCATGCTCATGATCAAGCCAGATCTTGCAGCCTTGCCTGATAGCAGTAATGTCTCTGAAATTCAAGACTCACAACATTGTCACCCCTCTACAACACCTGAAACTGTGGAGAGCAATTATTACAAAATCGGTGATCTTGTTGAAGCTATTGAAGACCAAAATGGTGCATGGTTTGAAGGTACAATTGTGAACATCATCAGGAACCCAGAAAACTCAACAGAGCCAGAGTCAGAGTTAGCAGGAGATATAAATGAGTCAGATCAATCTCCTGCAGAAATTTTGTCCATCAAAACTTATGCTGAAGATCCAACTCGTCAAGACGATGGATTACTGTACATGGTGTCCTTTGATTTCTCAGAGGATACCCCAATTGGTTTCCGTCTTAAACATGTCCGACCCGGCATGTATTCACCTTTGAACTTGTCTGACATCCCAAGTAAACTTCCACCCACTTGCTCCTATTGTCAAGACAACCCAAAACGGAAATGTAAAGAATGTTCATGCAATGTCTGTGGTGGTAAAAATGATGCGAATCGTACACTGATGTGTGATGAATGTGACTTGGCATACCACCTAGGATGCTTAAGCCCCCCTTTAGATGACGTACCTGAGAATGATTGGTACTGCCCTACGTGCAAAAATGATGAGAATGAAATTGTGAAAGCTGGTGAGAAGCCTAAACAAAGCAAAACGAAAAGTAAGGCACCCAGCGCTAAAGAAAAGGAAACAAAACGTGATTGGGGGAAAGGTATGGCATGTGCTGGCAGAACAAAACAATGTACCATTGTCCCAGGAAATCACTTTGGACCGATACCAGGAGTTGATGTTGGCACCGCCTGGCGGTATCGAGTGACTGCATCTGAAGCTGGAGTGCACAGACCTCCTGTCGCTGGCATTCATGGCCGTGATAATGAAGGTGCTTACAGTATTTGTTTGAGTGGAGGGTACAATGATGATGAAGATAATGGAGATGAAGTTTATTACACTGGATCTGGAGGTAGAGACCTATCGGTTAAAGGTGCTGCGGCTAAAAATTGGAAAGCAGGGAAGCCTGTCAGAGTTTTGCGAAGCTATAAGGCAGCTAAGCATTCAACATATGCTCCTGAACAAGGATACAGGTTGTATCCTGATGGACATGAAGAAATGGAACAGGCTAAAGAAGCTGAGGAACTAAAAGAATTCAGGAACGAAACTGGAAAGAAAACAGGAAAGAAACGTGTCCTTGCTGAATCCACATTCTGA 1350 0.4289 MFLSRLLLCIHDLKFTSQQLEEGSRVIDYNINLNDVVMLMIKPDLAALPDSSNVSEIQDSQHCHPSTTPETVESNYYKIGDLVEAIEDQNGAWFEGTIVNIIRNPENSTEPESELAGDINESDQSPAEILSIKTYAEDPTRQDDGLLYMVSFDFSEDTPIGFRLKHVRPGMYSPLNLSDIPSKLPPTCSYCQDNPKRKCKECSCNVCGGKNDANRTLMCDECDLAYHLGCLSPPLDDVPENDWYCPTCKNDENEIVKAGEKPKQSKTKSKAPSAKEKETKRDWGKGMACAGRTKQCTIVPGNHFGPIPGVDVGTAWRYRVTASEAGVHRPPVAGIHGRDNEGAYSICLSGGYNDDEDNGDEVYYTGSGGRDLSVKGAAAKNWKAGKPVRVLRSYKAAKHSTYAPEQGYRLYPDGHEEMEQAKEAEELKEFRNETGKKTGKKRVLAESTF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000414g0006 449 Pfam PHD-finger 204 250 IPR019787 -
Alju1000414g0006 449 CDD PHD_UHRF1_2 203 248 - -
Alju1000414g0006 449 ProSiteProfiles YDG domain profile. 305 445 IPR003105 -
Alju1000414g0006 449 SUPERFAMILY PUA domain-like 286 409 IPR015947 -
Alju1000414g0006 449 SMART PHD_3 203 249 IPR001965 -
Alju1000414g0006 449 SMART G9a_1 300 425 IPR003105 -
Alju1000414g0006 449 Gene3D - 285 414 IPR036987 -
Alju1000414g0006 449 Pfam Tandem tudor domain within UHRF1 75 198 IPR021991 -
Alju1000414g0006 449 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 13 409 IPR045134 -
Alju1000414g0006 449 MobiDBLite consensus disorder prediction 418 443 - -
Alju1000414g0006 449 MobiDBLite consensus disorder prediction 256 282 - -
Alju1000414g0006 449 ProSiteProfiles Zinc finger PHD-type profile. 201 251 IPR019787 -
Alju1000414g0006 449 MobiDBLite consensus disorder prediction 418 449 - -
Alju1000414g0006 449 SUPERFAMILY FYVE/PHD zinc finger 201 255 IPR011011 -
Alju1000414g0006 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 252 IPR013083 -
Alju1000414g0006 449 Pfam SAD/SRA domain 303 409 IPR003105 -
Alju1000414g0006 449 Gene3D - 69 170 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000414g0006 279 420 C2H2 Transcription Factor Family AT5G39550 42.262 1.80e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju1000414g0006 SAD_SRA 9.8e-33 CL0178