Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000408g0022 ATGACGGACGAAAGCCAGCCAAGAACCCTATACGTGGGAAACCTTCACACGTCCGTGTCTGAAGATCTTCTATGTACTCTGTTTTCTCAAATTGGACCTAAGGCAGAAGCTGAAAGTGCAATTCAGGCAATGAATGGTCAATGGCTTGGAAGTCGCAGCATTCGTACCAATTGGTCAACTAGGAAACCACCTCCTCCTAGGAATGAAAGACCTCGTCATCCAGCAACAGGGAAACCCGCAACATATGATGAAGTTTACAATCAGTCGAGTCCAACAAATTGTACAGTATATTGCGGAGGTTTCACCAATGGCATACAGGAAGAAGTAATCCAAAAAACCTTTGCACCTTTTGGAACTATTCAAGATATAAGGGTGTTCAAAGACAAGGGCTATGCATTTATACGGTATGCAACTAAAGAAGCAGCTGCTCTTGCAATTGAGTCAGTACACAATACAGAAATAACTGGCCAGACAGTTAAGTGTTTTTGGGGCAAAGAATCTGGAGATCCGAATAACCCTCCCCAACCTGGAGTACAACCTGCTGCCCAGCCACAAGCCGCACAACCTCAGGCGCAACCTCCACAGACAACTACAACTGCTGCTGCTGCTGCTGGACAGTATCCCTATGCGTATGGTCAACAAATGGGTTATTGGTATCCACAGTCATATGCTGGAGCTGGCGGTGGTCAATATCTTCAAAGCATGCAACCTGGCTACACAGCTACTTATGGTCAATTCACCTATCCTCAAGCCTATGTGCAGAGAATGGGCCTGCAAGTCCCTTGGCAGGCTATTCCAGGTCAACCAGCTGCTGCAGCTGCAGCTGCAGCTGTTACAAGTCAGCAGGTGATGACAGGACAAGCTCCACTTCAGCCACCAGCCATGATGTATGCAGCAATGCAGCAGTTCCCTACACCTCAGTGA 924 0.4751 MTDESQPRTLYVGNLHTSVSEDLLCTLFSQIGPKAEAESAIQAMNGQWLGSRSIRTNWSTRKPPPPRNERPRHPATGKPATYDEVYNQSSPTNCTVYCGGFTNGIQEEVIQKTFAPFGTIQDIRVFKDKGYAFIRYATKEAAALAIESVHNTEITGQTVKCFWGKESGDPNNPPQPGVQPAAQPQAAQPQAQPPQTTTTAAAAAGQYPYAYGQQMGYWYPQSYAGAGGGQYLQSMQPGYTATYGQFTYPQAYVQRMGLQVPWQAIPGQPAAAAAAAAVTSQQVMTGQAPLQPPAMMYAAMQQFPTPQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000408g0022 307 SUPERFAMILY RNA-binding domain, RBD 4 77 IPR035979 GO:0003676
Alju1000408g0022 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 160 IPR000504 GO:0003723
Alju1000408g0022 307 MobiDBLite consensus disorder prediction 52 82 - -
Alju1000408g0022 307 SUPERFAMILY RNA-binding domain, RBD 81 170 IPR035979 GO:0003676
Alju1000408g0022 307 MobiDBLite consensus disorder prediction 163 196 - -
Alju1000408g0022 307 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 34 166 - -
Alju1000408g0022 307 SMART rrm1_1 95 162 IPR000504 GO:0003723
Alju1000408g0022 307 SMART rrm1_1 9 57 IPR000504 GO:0003723
Alju1000408g0022 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 166 IPR000504 GO:0003723
Alju1000408g0022 307 Gene3D - 74 173 IPR012677 -
Alju1000408g0022 307 MobiDBLite consensus disorder prediction 181 196 - -
Alju1000408g0022 307 FunFam Rox8, isoform B 75 173 - -
Alju1000408g0022 307 CDD RRM3_TIA1_like 94 164 - -
Alju1000408g0022 307 Gene3D - 1 52 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000408g0022 91 163 Eukaryotic Initiation Factors Gene Family AT2G36660 24.051 9.03e-06 45.1