Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000397g0010 ATGGAGAAGAAATCAGCTTTCACATGGGTGAAGGCTGAAACAGTGAATTCTGTGTTGGCAACTAGAAATATAGCAGTTGTGACATTGGGTGACCATGAAATGTCTGCAAATTGCATGCAAAGTTATGGTGCTGTGGAAAACAGTCAAAAAATCCATCTTTATTATTATGAAGTGGGACCTGATTCGGACAGGTCTGGTGGATCTGGCCCTGAGGAGGGCCCATCACATCATGCTCGTAGGCCCATGAATGCCTTCCTTATTTTCTGTAAGCGTCACCGCCCAATAGTCAGGGAGCGCTATCCTCATCTTGAGAACAGAGCTGTGACCAAAATACTTGGAGAATGGTGGGCTAATTTGGAGCGTGAGGAGAAGGCATCATACACTGAATTGGCTGCTCAGTACAAGGATGCCTTTTTGAAAGCACATCCAGATTTTAAATGGTACAAGTTACCTGCTCCCCCACTGAGACTTCTGAATACCAGACCCAACAATACCGTCAAAGCACCGAAAATTTCAACAGGTGTGATTACTCCAGGGAAACTTGCTGATGAGACTCAGCTAGGTGGTCTGAGTAGCCTACTTGCTGGTACATCTGCACCCCCATCAGCAGCCACATCAAACATTGGTGAAACCAATCAAGGAGCTGTTTCAAAGGAACCAACTACGGGTGATAAATCTGCTAACCCTGCAGGAAAGGATACTGGCACAAGGTTGGAGACAGCAGTAGCAGATAAAACTTGTGTGTCTCCTGAGCCTCAAACTTCTGGTAAAGACCCTAGTGGAAGCTCAAAATACCCACCATCAGTCACTGTTGTGACAGATACCTTGACAACATCTACCATAACTTTAGCAGGACGGCCTTTGCCCTTACCTACTGTACCAGCCATACCATCAACACCAAATCTACCCAATTTCCCTATGCAACCTTTGTCCTTGAGTATAGTCTCAAGTGACTCTCCTCTCTCTGATGCTGCTGCCTCCCTGCTTGTGGACTTAAATGTGGCCTCAGGCTCAGCCAATGAGTCCCCGCCTGCTCTTGCTATTTCCTCAAACATGACCAATCTGCCTTCTCCTCCTTCCACTCCCCCATCACCATTAACTCCTACAAATCCTAATGTGCCACGACCTCCAAAGAAACGATACTTACAGCAAGCACTGGCTGCATCTATGCAAGATGGGGAAGGTGACATTTCTCCTCATACAGATGATGACACCGAGACCAAATCTTTGTCTCCAAATCTTCATTTTGATTTCAATAGATTAGGGGAAGAAAGTAGCAGGGAAGATAAACCCTGTCAGAAGTCACAATTCATAGAAGGGGAAGAGATGCCAGCGACTGTTGGATCAGACACTAAAGTGAAGGTTGAAGGACATGATGACGATTCCAAAGAAACTACCTTTCAAACATCACAACAGCAATTGATTGAGCGCGTCGTAGATAAACTATGTCGATCCTCAAGTAAAACATTATTGAGTTTGCCTGCCCATCTGGAGGAGGAGACTGCAGTCACTTGTGATACTGCAAAGCAACCCATGGTTAGTGAAATAAATGATAATTCAAAGGATGAAAACCTCCAGGAAACTAAACCAAGATCCTGTGGTGTCACCTGTGAAGAGACTCAAGATACTGAAAAAGATGATGGAGCTTCTAGAACAGCGTTAAAATCTGAGGTACAGAATGATTTAGGAGAGAGAGCAGATGTTAAAGAAAATGAAGCCTCCAATGTTTCATACCTCAGCAGGTGTTCTGATGCAAGATTGTATCATAGTCCAGCCATTAAACATCCACCTGTGTTAACACATGAGGCTGGGCCTCACAAGGATAAACTTGAAATTCCCTTGCAGCAACCTGTGGATGTTTTATCTTCTGATAACATTGAAGTCAAAGACTTTTCTGCGACCATTCCTGGGATCCAAAATGTGGTTGGTATTGTTGACGCCAGTCGCATAGAGAATTGCGACAGTGATGAGGTGGCAGCAGCGGTTGGCCTCTTAAGTTTGCCTTTTAAAGCTGTTGTGAGCCCAACTGAGAGCTTAGAAAGTGGAGAAGAGGCAGAAGATGGAGATCAAGGGATGGCCAGTCAAATGTTGAACATGAACTCAGAAGGAAGAAGGAGCTCATCTCGTGCCTGCAAGGGTCAAAGATACCGAGAGTTCATGATGGAGGGTGGTCTTACTAAAGGCCGGAAAGGGCCGCAGAGGAATTTTCAAGTAAGTTCACCTTTCTTTAAAACTTCCAATCTTAATAAAATGCAAGAAGATGCACCATATGGTTCCCATTCATCTAACAAACTTAGAGAGGGGAGGGATTTCTCTGTAAACCCTATTTCAATGGAAATGTCCAAGAAAGGTTGTCGGAAAGAAAATTCTTTCAAAAGGAGACCGGACTTTGTCGAGGACTTTCTGCCTGGCAAGATTAGAAAAACAGATGCTACTGTTGATGAAACTTGCTCACCTAGTTTTGAACTCTTTGCTAGTCAAAAGCCCATTGGCATGGCCACTAATACCTTACGACCACAGTACCTTTTGCTTGGAACCTCGGATGGTCAAGGGAACTGGAGCAATCAACCTGAAAACAAAGTCTCCTCTCCAGTTGCATTTGTCCCTGCTACAACTGCAGAACCAAGGAGTGAGGTATCTGTTTCAAGTTCCAAAGCTCTAAGGCCAGACTCTTTAGGATTTTAATGGAAAGTAAAATCATGTCCGGGTCATTGTCTTCTACATCGGATTCACTGCAGGGTTCTCAGTCACGGTTGTGACTTTAATCTGGAAGAACGTATTGGAGCCCTTCCAGCACTCAGCCTTGAACAGTTCCAACAAAGAAAGAAAGCTCGTAAGAAGCGTACAAGTGACAGTTCGACGACTGATCATGACAGACTGAGATCCCATGACTACTTGCCAAAAGTCTCAAGGAAGCACCGCTTTGTTCATAGTCACAGTGGGAAGAGTTTTGCTTTGGGTAGTGACATACATAAATCTAGTCAAGTTGGTTTTATGAAATTGAAAGACAATATTCCAACCCATAATGTCTTCAATGAAACAAACAATAATGACCCTCTGAGCGTCCCTCCCAAGAGAATGGAGGAATGTGAAAGTAAAGATAATAATGCTCTGCAGCCTGGCAAGTTCTCATTTAAAAAGAAAGTAAAAACTGACAGTGGACTTTCAACAAGTAGTGACCTATGGAACACTGAGATGAGGTTGTTTGACAATACATTGAAGCGAAAGAGTGGCTTGAAGAAGCCTAAAGGAAGTACCCATGAGATGAAATCTTACCCAACTACTGTTGTGCGACTGCCAAGTGATAGTCAAAACAATGCAGCTAGTCTTGCAGTCACTGTGACTTGCAGCAGCACCTGTGGAGAAGGTTCTCCATCAACTTCTACTACTGTCAATAATAATTTCATTATCCACAAAAATGAAGGTACTCATATCTCAGGTCCAAACTTGGTAGGAAGTCAGAAAAGAAAAGCTCGTAAGGAATGTATAACAAGACGCACACCTGGTTCTGAAGCAAGTATGAAAGATACTGCAGTGCTAGAACCATCTACTATTTGTGACGTCTTTGGTCTTGCCACACTTGCTGAGGTTGCTGCTGCTAAAGTTCACCTAGTGTCTTTCAGCATTGTCATTTCTACTTTCCTAAGACTGTTCAGATATGAATACTCCAACTTTCAGGTCATAAATTCTTCAGTTTGTGGCAAAGTATGGGCCTTCAAAATTGAAACCAATTTTGACCCCTCTGTGAGCATGCCCATTACTTGTGTAGAAGACATGTTCTTAAATTTTATTGTTCTTATGTACTCTGTCTCTTCAACTAATTTCTTTCGCTTCTTTGATGGTGACAGGACCATGGTATGTGCTGCTTGCAGTGTTTAG 3879 0.4339 MEKKSAFTWVKAETVNSVLATRNIAVVTLGDHEMSANCMQSYGAVENSQKIHLYYYEVGPDSDRSGGSGPEEGPSHHARRPMNAFLIFCKRHRPIVRERYPHLENRAVTKILGEWWANLEREEKASYTELAAQYKDAFLKAHPDFKWYKLPAPPLRLLNTRPNNTVKAPKISTGVITPGKLADETQLGGLSSLLAGTSAPPSAATSNIGETNQGAVSKEPTTGDKSANPAGKDTGTRLETAVADKTCVSPEPQTSGKDPSGSSKYPPSVTVVTDTLTTSTITLAGRPLPLPTVPAIPSTPNLPNFPMQPLSLSIVSSDSPLSDAAASLLVDLNVASGSANESPPALAISSNMTNLPSPPSTPPSPLTPTNPNVPRPPKKRYLQQALAASMQDGEGDISPHTDDDTETKSLSPNLHFDFNRLGEESSREDKPCQKSQFIEGEEMPATVGSDTKVKVEGHDDDSKETTFQTSQQQLIERVVDKLCRSSSKTLLSLPAHLEEETAVTCDTAKQPMVSEINDNSKDENLQETKPRSCGVTCEETQDTEKDDGASRTALKSEVQNDLGERADVKENEASNVSYLSRCSDARLYHSPAIKHPPVLTHEAGPHKDKLEIPLQQPVDVLSSDNIEVKDFSATIPGIQNVVGIVDASRIENCDSDEVAAAVGLLSLPFKAVVSPTESLESGEEAEDGDQGMASQMLNMNSEGRRSSSRACKGQRYREFMMEGGLTKGRKGPQRNFQVSSPFFKTSNLNKMQEDAPYGSHSSNKLREGRDFSVNPISMEMSKKGCRKENSFKRRPDFVEDFLPGKIRKTDATVDETCSPSFELFASQKPIGMATNTLRPQYLLLGTSDGQGNWSNQPENKVSSPVAFVPATTAEPRSEVSVSSSKALRPDSLGFXWKVKSCPGHCLLHRIHCRVLSHGCDFNLEERIGALPALSLEQFQQRKKARKKRTSDSSTTDHDRLRSHDYLPKVSRKHRFVHSHSGKSFALGSDIHKSSQVGFMKLKDNIPTHNVFNETNNNDPLSVPPKRMEECESKDNNALQPGKFSFKKKVKTDSGLSTSSDLWNTEMRLFDNTLKRKSGLKKPKGSTHEMKSYPTTVVRLPSDSQNNAASLAVTVTCSSTCGEGSPSTSTTVNNNFIIHKNEGTHISGPNLVGSQKRKARKECITRRTPGSEASMKDTAVLEPSTICDVFGLATLAEVAAAKVHLVSFSIVISTFLRLFRYEYSNFQVINSSVCGKVWAFKIETNFDPSVSMPITCVEDMFLNFIVLMYSVSSTNFFRFFDGDRTMVCAACSV 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 693 707 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 941 964 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 677 713 - -
Alju1000397g0010 1292 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 78 146 IPR009071 -
Alju1000397g0010 1292 Pfam HMG (high mobility group) box 79 146 IPR009071 -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 336 355 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 356 375 - -
Alju1000397g0010 1292 Gene3D High mobility group box domain 67 146 IPR036910 -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 396 410 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 191 270 - -
Alju1000397g0010 1292 CDD HMG-box_HBP2 79 147 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 247 270 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 191 229 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 538 557 - -
Alju1000397g0010 1292 SMART hmgende2 77 147 IPR009071 -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 517 557 - -
Alju1000397g0010 1292 SUPERFAMILY HMG-box 74 147 IPR036910 -
Alju1000397g0010 1292 PANTHER HMG-BOX TRANSCRIPTION FACTOR BBX 64 959 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 336 413 - -
Alju1000397g0010 1292 MobiDBLite consensus disorder prediction 949 964 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Alju1000397g0010 HMG_box 8e-18 CL0114