Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000381g0006 ATGACTCGTGTCAGTGCTCGTTCAAGGGCAAAAGTCACTCAGCTACCTAATGCAGAAGAAAGTAAGGAAAACACCAAAGTGGGTAAGGATCAAAGTAAAAATGCCAAAGAAGCAACAAAAAATACCAAAGCAGTACCAGAAGCCAGTAAGGCTCAAACTCAAGCAAAGGTAAGAGGTAGAGGAGAAAGAAGTTCGAGGAGCATTGTCAAGGAAGAGAATCTTGAGCTAGCAGCAGAACTTGAAGCTCTTCTGAAAAAAGTAAATGTGGAAGCAGCAGAAGTCAATCTAAACTTAAAAGAAGAAGATGATGATGAGGATGAAGAAGAGGAGGAGGAAGATGAAGAAGAGGAAGAGGAGGAACTGGATGATGAAGCGGATAAAGAGGAAGATGATGTAGATGAAGATGGTGATGAAGACGATGATGAAGACGAAGATGACAGCAGTAATCTCTGTATTGATGAAGATAAAGACAGAAAGGAAACAGATATAGGATACCAGTGTGCTTTCTGTGAATATACTTTCACCCGGAAAAGCATGCTTAAGCGCCATGTCCGAATCCATACTGGTGAAAGACCTTATGCCTGCGACAAGTGTGATGCCAAATTTACCCAGCAAGGGGGACTGAAGACGCACATGCTATGTAAACATCGTGATCAGATCGACCAGAAAGATAAAGTGACATATCAATGCCACCACTGCGACAGATCATTTGTCATTAAGGAACGTCTCAGGATTCATTTACGAGTTCACACAGGGGAGTTGCCTTATGTTTGTCATATTTGCTCTAAAAAGTTCAGAAGAAATGGTGGCCTCCTTCAGCATCTGCGGAGACATGTAGGTATGCGTCCGTACACTTGTGAAATTTGCAAGGCCTCATACTACAACTCTACTAATTTAAAAACACACATGAAGCGGCATCTTGGAGTTCAAGATTATGTTTGTGATCTGTGTGGAAAAGGCTTTACTAGGAGAGATGGACTTCGAAAACATCTTGCTTGCCTTCATTATGATCAGTGTGCATTTCGATGCTCTATCTGCAACAAATCATTTAAAGGACATATTCTGTCACATTTGCGCATGCATTTGAAAGAAAAACCATTCAAATGTGAAATTTGTGGAATGAGATTTGTTCAAAGCTCTCAGCTTGTGGTGCATACCCGAACTCACACTGGAGCAAAGCCATACCCTTGTCAAATCTGCAAAGTGGCCTTTTCTCATTCATCTGCATTGAGAATGCACATACGGAGACATACTGGAGAAAAGCCAGTGAAATGTTTGCTTTGTCCAGCTGCATTTGTTCAACTCCCTCACCTTAAGAAGCACATGCGATGCATTCACAAAACTGATAAACCATATGTTTGTGTTCCCTGTAATAGTTTCTTTAAAAAAAAGGTAGAGCTTGAGGAGCATATGAAAGCTGTAGGCTGTGTACCAGCTGTCGCACCAGAAGCAAAACCAACTGAGAATGCTTCCGGGGAAGGTTCACCTCCAGCTAAACGATCAAGAAAGAGATCAGCCAGAGAGCAAGACAAAAGTGAAGGTGTTACAGTGAAGATCCAAAAACTTTCGGATGATGAGGAAATGTCTCCACTTGCACCAGGAAATGGTGCTGATCCAGATGAAGAAGTGAAAGAAATACCTAATCTGAAAGGCTCTAAAGTGGTGGAGGCATTTTATCATCAGCAGCTAGCATCAGATCACGAAAGCCAAACCAATGTTCCTGTCTCTCGGACAAACAAAAACAAGTATTCTGGCTCTGCTAACTCTTCTAAATCAAGCTCCACTATTGGAAACTTGGGAGAGTTTAAATCCTCCAAGAAACCTGAAACCTCAAATGGTGCACCCAAGTCTCTTGATTCATCAAACCATAGAGAGACGCGGTCTCGGGTTCGTCGTAGTGTGTCATCAGACACCGGAAATCTGAAGCCTAAGTCATCTGAGACAGATTCAGACAATGATGCTCTCGCAGGGCTTCTTACAAAATCTTCCTCATCATCAAGGAGGTCTAGTTGCGACAGTAAAAGTCAAAGAACAGTTCTATCTGCAAGTCCCAAAAGATCAGGATCTGTAGACCTGGCAAAACCCAACTCAGTTCATCCAGATGATCCAGATGATCCTGACTGTAGGTGTGACAGTCCTATTTGTGAGCCATTAAAAACAGTGGATCAACCAACATCAGTAATGGTTGAGGAAATGATGCGCAAGGTCACAGAGCGCTTGAAGATGGGTGCCAAGCAACCAGTTGTCATTAGAAATCAACCGATGCCTATAGAAAAGATTAGAATGCTGCTTGCCATTCTTCTTACCCGCATCTCCACTCCTGAGCGCTTAGAAACTCTGGGCTTTGGAATAACCTTTGCAGATTGTGCTCTCTTGCCACCTGCTGCACCGCATAGTAGTAGGTCTAGTCACTATGCTGAGACTTTCAGTGTAAGAAAACACCTTGCCTTCATTTGTCTGTCCCACCGTTTGCATCATAAGCTGTAG 2487 0.4278 MTRVSARSRAKVTQLPNAEESKENTKVGKDQSKNAKEATKNTKAVPEASKAQTQAKVRGRGERSSRSIVKEENLELAAELEALLKKVNVEAAEVNLNLKEEDDDEDEEEEEEDEEEEEEELDDEADKEEDDVDEDGDEDDDEDEDDSSNLCIDEDKDRKETDIGYQCAFCEYTFTRKSMLKRHVRIHTGERPYACDKCDAKFTQQGGLKTHMLCKHRDQIDQKDKVTYQCHHCDRSFVIKERLRIHLRVHTGELPYVCHICSKKFRRNGGLLQHLRRHVGMRPYTCEICKASYYNSTNLKTHMKRHLGVQDYVCDLCGKGFTRRDGLRKHLACLHYDQCAFRCSICNKSFKGHILSHLRMHLKEKPFKCEICGMRFVQSSQLVVHTRTHTGAKPYPCQICKVAFSHSSALRMHIRRHTGEKPVKCLLCPAAFVQLPHLKKHMRCIHKTDKPYVCVPCNSFFKKKVELEEHMKAVGCVPAVAPEAKPTENASGEGSPPAKRSRKRSAREQDKSEGVTVKIQKLSDDEEMSPLAPGNGADPDEEVKEIPNLKGSKVVEAFYHQQLASDHESQTNVPVSRTNKNKYSGSANSSKSSSTIGNLGEFKSSKKPETSNGAPKSLDSSNHRETRSRVRRSVSSDTGNLKPKSSETDSDNDALAGLLTKSSSSSRRSSCDSKSQRTVLSASPKRSGSVDLAKPNSVHPDDPDDPDCRCDSPICEPLKTVDQPTSVMVEEMMRKVTERLKMGAKQPVVIRNQPMPIEKIRMLLAILLTRISTPERLETLGFGITFADCALLPPAAPHSSRSSHYAETFSVRKHLAFICLSHRLHHKL 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 425 446 IPR013087 -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 367 394 IPR013087 -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 419 488 - -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 308 357 - -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 650 685 - -
Alju1000381g0006 828 FunFam zinc finger protein 697 249 278 - -
Alju1000381g0006 828 Pfam C2H2-type zinc finger 312 337 - -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 340 IPR013087 -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 341 366 IPR013087 -
Alju1000381g0006 828 SUPERFAMILY beta-beta-alpha zinc fingers 403 461 IPR036236 -
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 159 189 - -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 362 392 - -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 218 252 - -
Alju1000381g0006 828 FunFam zinc finger protein 197 isoform X1 364 392 - -
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 369 389 IPR013087 -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 190 217 - -
Alju1000381g0006 828 SUPERFAMILY beta-beta-alpha zinc fingers 165 213 IPR036236 -
Alju1000381g0006 828 Pfam Zinc finger, C2H2 type 165 187 IPR013087 -
Alju1000381g0006 828 Pfam Zinc finger, C2H2 type 228 250 IPR013087 -
Alju1000381g0006 828 Pfam Zinc finger, C2H2 type 367 389 IPR013087 -
Alju1000381g0006 828 Pfam Zinc finger, C2H2 type 284 306 IPR013087 -
Alju1000381g0006 828 Pfam Zinc finger, C2H2 type 395 417 IPR013087 -
Alju1000381g0006 828 Pfam Zinc finger, C2H2 type 256 278 IPR013087 -
Alju1000381g0006 828 FunFam zinc finger protein 697 190 214 - -
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 397 417 IPR013087 -
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Alju1000381g0006 828 FunFam zinc finger E-box-binding homeobox 1 164 189 - -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 1 21 - -
Alju1000381g0006 828 PANTHER ZINC FINGER PROTEIN 142 274 425 - -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 563 619 - -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 93 154 - -
Alju1000381g0006 828 FunFam Zinc finger protein 419 446 - -
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 314 335 IPR013087 -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 97 150 - -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 253 277 - -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 395 422 IPR013087 -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 221 IPR013087 -
Alju1000381g0006 828 SUPERFAMILY beta-beta-alpha zinc fingers 236 291 IPR036236 -
Alju1000381g0006 828 SUPERFAMILY beta-beta-alpha zinc fingers 353 404 IPR036236 -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 497 525 - -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 1 72 - -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 367 389 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 284 306 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 423 446 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 395 417 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 256 278 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 341 361 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 193 216 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 165 187 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 228 250 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 452 472 IPR013087 -
Alju1000381g0006 828 SMART c2h2final6 312 335 IPR013087 -
Alju1000381g0006 828 FunFam Zinc finger protein 280 306 - -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 393 418 - -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 311 IPR013087 -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 484 543 - -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 560 710 - -
Alju1000381g0006 828 Gene3D Classic Zinc Finger 278 307 - -
Alju1000381g0006 828 FunFam ZFP90 zinc finger protein 393 418 - -
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 195 216 IPR013087 -
Alju1000381g0006 828 ProSitePatterns Zinc finger C2H2 type domain signature. 286 306 IPR013087 -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Alju1000381g0006 828 SUPERFAMILY beta-beta-alpha zinc fingers 278 330 IPR036236 -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 22 37 - -
Alju1000381g0006 828 MobiDBLite consensus disorder prediction 56 72 - -
Alju1000381g0006 828 Coils Coil 66 138 - -
Alju1000381g0006 828 ProSiteProfiles Zinc finger C2H2 type domain profile. 423 451 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000381g0006 370 443 C2H2 Transcription Factor Family AT5G04240 33.333 3.43e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju1000381g0006 zf-C2H2_6 0.00028 CL0361