Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000315g0010 ATGGCCATCGCGCTTGGCTTTCTCCGCCATTCGGTGTCGCCTCCACGTCTCGGTCAGTTCGCGTCCCGCTGCCTGCCGCTGTCGTTCGTTTTACCGGCGTGTAGGAATTACGCTGCAGCCATGAGCCTTCCTCGTGTGTATTTCGACATGACTGTCGATAACCAGCCTGCTGGCAGGATCGTAATCGAGACTCTGCTCTATGCCCGGATTTTGTGTAATGGCCTCATTGTCGTGGCTCTGGGGAAGAAAGTGTCTCCACGTGGGGAGGGGTGCGGGGGCGCCGCCTCTGTCGCTTTTCAGGCGCGGCATCGAAAACTAACCTCGTCGCGGCCCTGGTCACCTAGGGCAATTATCATTTGGTTAGCTGGCGGTCGATACTGGTTGGCCTTCCAAGGTCATGCAGTGGACTGTGTCGGGGCCGTCGGGCCGGTTTGGGTTGACCCGGACCTGCGTGCGCCTGGAGGACGGAATGTCTTTGGCCGTGATCGAATTTGCGATTGGGGGGCAGGTGGCGCGCCGGTCAGGATAGCGACTCCCGTGTGCTCCTGGGTCCAATGTCCTACAGGCATCATGTCAATGGCTAATGCTGGCCCCAACACCAACGGTAGCCAGTTCTTCATCACCACCATCAAGACCAGTTGGCTTGACAACAAGCATGTTGTCTTTGGCAGTGTTGTGGAGGGCATGGATGTTGTCAAGAAGCTCGAATCGTATGGCTCCCAGGATGGCAAGACATCAAAGAAGATTTGCATTGCTGACTGTGGCCAGCTTTCAACTGGGAAGTGCCGTGGGCTCACCCGGCAGACTCGAAGCGAACAGCACGACCTTGCATTCGAAATTGCCCGCTATCGGACCCCCAACCTCGCTTCTGCCGCAGCAGTTCAGAATGAAATTAAGGGGGGCAGTGCGTTCAGAAGCGCCCTCTGTCGCAGGAGGATAGGCTTGGCTTCGAGTTGGCAAGCGAATTTAGGCTTTGTCGACGCCCTGCCGAGCGGCTTGCTGTCCAGTGTCCCTGCTCAAGGTAGCCAGAGGCGTGACGCGAGCAAAATGATGGATGAAGAGGTTCTGAATGGCAACGACGGCGAGGTGGCCGCCGAGGATGTTGACCAAAATGGCGAAGCAGCCGCCAGCCCCGGCAAGAAGGCGAGCCCTGCGCCCAACGGCACGGAGGCCCTCGGTGCTGCCTCTGCTGAGCGTATTAAGATAAAGGGCAAGCGAAATGTGCGCTCGCTGCCCAAGGAGGTGACGGCGGGCCCAGGTGGTGGAGCAGGGGGCAAGGGCACATGGGGGCAGTTGGGGTCAGAGTTACAGGAAGTTGATGAAGATATGAATGACCCTAATTATGACAGTGACTCTCTTGACAATGGTGACATTGAGCTTAAGAGTGTCATTCCTGAGATGACTGAAGAGGATCTTCAGAAATTAGTTGAGCCCATCATTTTGGAATATTTTGAGAATGGTGATGCTTATGAGGCTAGTCTTGCTCTGGATGAAATCAATAGTGGTTCAAAGCGTTACATGATTGTCCAGTTTGCCATTGAAATGGCTATGGACCACAAGCCATCTCACCGAGAAATGACTTCTGTTTTGATCTCAGACCTGTATGGTCGTATTCTTTCTCAGAGGGATATTTGCAAAGCATTTGATGCTCTGATGAAGAACTTGCCAGATCTCATTCTGGACACTCCAGAAGCAGACACAGTACTTGGTCATACCTTTTCAAGATTCCATCTTTCCCCAACATGTCACACCATTCCTCGTTTCATATTCGGCGCCACACTCGCTCAACTTGAGATCGTCATGGCTGGTCATGGTTGTCGATCTTCCAGGCGTGAGTTCTCGAGGTCCGATCGGGCGTCCTGGGATTCACTCTGGCGACATTGGGAATCTCTTGGCTTGTCTGCAGATCGGAAAATGTCGATGTGGTCCTACTTAGGAAAGTGGAGAGAGGAAAGTACCATGGCGGAAGTGAGCAATAAGAAAAAGTCTGGACCCAGGACGTACAGTGGCCGCTCTGGAAAAAAGATAAAGCCAGATCCTGATGGCTTGTCAGATGATGAGCAAGGCTCAGGGCTTAATGAAGTAGATGAAGTTGAACCTCCTGTTTCACCAGCTCCTCGAACAGGTCTTCGTGTACGTAAGCTCCCTCTAGCCAGGGATGCTCCTGATGCCAGTGAGGATTCTGATTCTGGAAATAAGAAAAAGAAAAATGCAGTGAACAACAATAATAATCAAGGCAATGATTTGAAAGGCAAAGGTGGCAGAAAGCAAACCAATTCAAAGCAGTTTATGTCTATGAATCATGATGATTCAGAGGGACAGAGCTCAGATGATCCTTCAATGTCCCAGAGCTCTAAGTGCCAGCAATGTTTCAAAGTGTTCCCTAATTCAGCTAGCTTGAAAAGTCATTTGAAAAGCTGTCCAGCCTTGACAACTGATGGAGGCATAACCATAACAGCAGAGCGGAGTGAGATGATTCTGCCCGACCATCTGGATGAAATGCATGGCGGCCACAATGATTTAATGGATGCTGACAATCTCTTGGATGCAGAAAATCTGGCAGCAGAAATGCCTGTTGGAAAGTGTCATTGTTGTGGAGAAGATATGGATGGAGCTCATGAGAATGGAGAGTTTGCGTGCCTTGATTGCAACAAGCAATTTAAACTCAAATCCAGCTTGGAACGTCATAGACGTGTTATCCATGCTGAAGGTGATACATATTCATGTCCTGAGTGCAATGCTCGCTGTCCTGACAAAGGAACGTTGGCCAGACACATGTACACTCATACAGGTCTAAAACCATATGAGTGTGAAAGATGCAACATCAAATTCAGTAGGAAATATCACTTGGACAGACATGTCCTACAAAGTGGTTGTGATGGAAATGCCCGACCTCAGTATCCTTGTCAAGTGTGTGGTCGTGAAAAGCCATATGCCTGCTCGTATTGCCCCAAAGTGTTTCCCTCAAGCAGTGCAATGAAGAAGCACACTCGAATTCACACAGGAGAGAAACCCTATGAGTGCAAGGAGTGCATCATGCTTTTCACTACTGTTTTCTATGCTATACATACATTCTCATTACAGTGCTATGCAAAATTCACTGCCAAGGAAACCTTGAATAGGCACATGCGCACCCACACAGGGAACAAGCCCCACAGCTGCAAGTATTGTGGCAAAACTTTCATTCAACTTTCCCAATTAAGGGCTCACATTTTCCACCACACTGGTATGTATCACTCATGCAATAAAGGTTCATATGAAGAACCTCCTCGCTCTTGTGATGAATGCGGTCGTGCTTTTATCCGGCAAGACTGTTTACTGCGCCACATGCGTACGAAACACAGAGATATGCTAGAGGAAATTTTGGCTGAGGCTGAGAAGAAGAAACTGCAAGCTCAATTGCTTGTTGCTGCTAATGAGACTGCTGACAGTGGTGAGGTTGAAGGCCCTGCTCAAAGAATTACAATGCCTTCCAAGCATGTTTTGGAGGATGGAGCACTGGCTGACTCTGTTCGTGAGCTGCTCACTTTGCTTGTGGATGAAGCCACTCTGCGAGCATTTGGCTGGCCAGATGCTCCTGTTGATCAGTTGCTAGAAGCAGTGATTCGGCGCTGTGGCCATCCTCCTGCAGGATCGGACGATCTTCCTTACAGTGATAGGTTACGTCATAATGCCAAACTTCTCTTTACTGTAGTCATTGATGATACTGCTGTGAAGACGCTACTTAACAATCAGACAGTTGATGAAGTTATTTTGCATGTATTGCGTCTTGCAAAATCCTAA 3783 0.4964 MAIALGFLRHSVSPPRLGQFASRCLPLSFVLPACRNYAAAMSLPRVYFDMTVDNQPAGRIVIETLLYARILCNGLIVVALGKKVSPRGEGCGGAASVAFQARHRKLTSSRPWSPRAIIIWLAGGRYWLAFQGHAVDCVGAVGPVWVDPDLRAPGGRNVFGRDRICDWGAGGAPVRIATPVCSWVQCPTGIMSMANAGPNTNGSQFFITTIKTSWLDNKHVVFGSVVEGMDVVKKLESYGSQDGKTSKKICIADCGQLSTGKCRGLTRQTRSEQHDLAFEIARYRTPNLASAAAVQNEIKGGSAFRSALCRRRIGLASSWQANLGFVDALPSGLLSSVPAQGSQRRDASKMMDEEVLNGNDGEVAAEDVDQNGEAAASPGKKASPAPNGTEALGAASAERIKIKGKRNVRSLPKEVTAGPGGGAGGKGTWGQLGSELQEVDEDMNDPNYDSDSLDNGDIELKSVIPEMTEEDLQKLVEPIILEYFENGDAYEASLALDEINSGSKRYMIVQFAIEMAMDHKPSHREMTSVLISDLYGRILSQRDICKAFDALMKNLPDLILDTPEADTVLGHTFSRFHLSPTCHTIPRFIFGATLAQLEIVMAGHGCRSSRREFSRSDRASWDSLWRHWESLGLSADRKMSMWSYLGKWREESTMAEVSNKKKSGPRTYSGRSGKKIKPDPDGLSDDEQGSGLNEVDEVEPPVSPAPRTGLRVRKLPLARDAPDASEDSDSGNKKKKNAVNNNNNQGNDLKGKGGRKQTNSKQFMSMNHDDSEGQSSDDPSMSQSSKCQQCFKVFPNSASLKSHLKSCPALTTDGGITITAERSEMILPDHLDEMHGGHNDLMDADNLLDAENLAAEMPVGKCHCCGEDMDGAHENGEFACLDCNKQFKLKSSLERHRRVIHAEGDTYSCPECNARCPDKGTLARHMYTHTGLKPYECERCNIKFSRKYHLDRHVLQSGCDGNARPQYPCQVCGREKPYACSYCPKVFPSSSAMKKHTRIHTGEKPYECKECIMLFTTVFYAIHTFSLQCYAKFTAKETLNRHMRTHTGNKPHSCKYCGKTFIQLSQLRAHIFHHTGMYHSCNKGSYEEPPRSCDECGRAFIRQDCLLRHMRTKHRDMLEEILAEAEKKKLQAQLLVAANETADSGEVEGPAQRITMPSKHVLEDGALADSVRELLTLLVDEATLRAFGWPDAPVDQLLEAVIRRCGHPPAGSDDLPYSDRLRHNAKLLFTVVIDDTAVKTLLNNQTVDEVILHVLRLAKS 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000315g0010 1260 ProSitePatterns Zinc finger C2H2 type domain signature. 1054 1074 IPR013087 -
Alju1000315g0010 1260 Gene3D Classic Zinc Finger 1050 1075 - -
Alju1000315g0010 1260 ProSiteProfiles Zinc finger C2H2 type domain profile. 1052 1079 IPR013087 -
Alju1000315g0010 1260 PANTHER ZINC FINGER PROTEIN 722 1016 - -
Alju1000315g0010 1260 Gene3D - 461 583 - -
Alju1000315g0010 1260 MobiDBLite consensus disorder prediction 713 734 - -
Alju1000315g0010 1260 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 184 255 IPR002130 GO:0000413|GO:0003755
Alju1000315g0010 1260 Pfam Zinc finger, C2H2 type 907 929 IPR013087 -
Alju1000315g0010 1260 Pfam Zinc finger, C2H2 type 1052 1074 IPR013087 -
Alju1000315g0010 1260 Pfam Zinc finger, C2H2 type 878 901 IPR013087 -
Alju1000315g0010 1260 Pfam Zinc finger, C2H2 type 1093 1114 IPR013087 -
Alju1000315g0010 1260 Pfam Zinc finger, C2H2 type 978 1000 IPR013087 -
Alju1000315g0010 1260 Coils Coil 1115 1135 - -
Alju1000315g0010 1260 FunFam B-cell CLL/lymphoma 6, member B 1048 1075 - -
Alju1000315g0010 1260 ProSiteProfiles Zinc finger C2H2 type domain profile. 907 934 IPR013087 -
Alju1000315g0010 1260 SUPERFAMILY beta-beta-alpha zinc fingers 877 913 IPR036236 -
Alju1000315g0010 1260 MobiDBLite consensus disorder prediction 735 784 - -
Alju1000315g0010 1260 Gene3D Classic Zinc Finger 975 1002 - -
Alju1000315g0010 1260 ProSitePatterns Zinc finger C2H2 type domain signature. 1093 1114 IPR013087 -
Alju1000315g0010 1260 FunFam zinc finger protein 197 isoform X1 975 1003 - -
Alju1000315g0010 1260 SUPERFAMILY beta-beta-alpha zinc fingers 974 1018 IPR036236 -
Alju1000315g0010 1260 ProSitePatterns Zinc finger C2H2 type domain signature. 880 901 IPR013087 -
Alju1000315g0010 1260 SUPERFAMILY beta-beta-alpha zinc fingers 906 954 IPR036236 -
Alju1000315g0010 1260 ProSiteProfiles Zinc finger C2H2 type domain profile. 1023 1051 IPR013087 -
Alju1000315g0010 1260 ProSiteProfiles Zinc finger C2H2 type domain profile. 935 965 IPR013087 -
Alju1000315g0010 1260 ProSiteProfiles Zinc finger C2H2 type domain profile. 1091 1114 IPR013087 -
Alju1000315g0010 1260 Gene3D Classic Zinc Finger 1090 1138 - -
Alju1000315g0010 1260 MobiDBLite consensus disorder prediction 370 392 - -
Alju1000315g0010 1260 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 47 256 IPR002130 GO:0000413|GO:0003755
Alju1000315g0010 1260 ProSitePatterns Zinc finger C2H2 type domain signature. 909 929 IPR013087 -
Alju1000315g0010 1260 SUPERFAMILY ARM repeat 465 578 IPR016024 -
Alju1000315g0010 1260 ProSiteProfiles MI domain profile. 471 592 IPR003891 -
Alju1000315g0010 1260 MobiDBLite consensus disorder prediction 408 428 - -
Alju1000315g0010 1260 ProSiteProfiles Zinc finger C2H2 type domain profile. 878 906 IPR013087 -
Alju1000315g0010 1260 FunFam Zinc finger 45-like 930 955 - -
Alju1000315g0010 1260 SUPERFAMILY beta-beta-alpha zinc fingers 1090 1117 IPR036236 -
Alju1000315g0010 1260 SUPERFAMILY beta-beta-alpha zinc fingers 1033 1080 IPR036236 -
Alju1000315g0010 1260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Alju1000315g0010 1260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Alju1000315g0010 1260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Alju1000315g0010 1260 SMART ma3_7 472 583 IPR003891 -
Alju1000315g0010 1260 Gene3D Classic Zinc Finger 751 905 - -
Alju1000315g0010 1260 MobiDBLite consensus disorder prediction 653 784 - -
Alju1000315g0010 1260 Gene3D Classic Zinc Finger 931 974 - -
Alju1000315g0010 1260 Gene3D - 181 262 IPR029000 -
Alju1000315g0010 1260 ProSitePatterns Zinc finger C2H2 type domain signature. 980 1000 IPR013087 -
Alju1000315g0010 1260 ProSiteProfiles Zinc finger C2H2 type domain profile. 978 1005 IPR013087 -
Alju1000315g0010 1260 SMART c2h2final6 1028 1046 IPR013087 -
Alju1000315g0010 1260 SMART c2h2final6 878 901 IPR013087 -
Alju1000315g0010 1260 SMART c2h2final6 907 929 IPR013087 -
Alju1000315g0010 1260 SMART c2h2final6 935 955 IPR013087 -
Alju1000315g0010 1260 SMART c2h2final6 978 1000 IPR013087 -
Alju1000315g0010 1260 SMART c2h2final6 1052 1074 IPR013087 -
Alju1000315g0010 1260 SMART c2h2final6 785 805 IPR013087 -
Alju1000315g0010 1260 SMART c2h2final6 1091 1114 IPR013087 -
Alju1000315g0010 1260 Gene3D Classic Zinc Finger 1003 1049 - -
Alju1000315g0010 1260 Pfam MA3 domain 472 574 IPR003891 -
Alju1000315g0010 1260 SUPERFAMILY Cyclophilin-like 156 257 IPR029000 -
Alju1000315g0010 1260 Gene3D Classic Zinc Finger 906 930 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000315g0010 147 237 U-box Gene Family AT5G67530 34.066 2.53e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju1000315g0010 MA3 1.4e-14 CL0020