Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000243g0002 ATGGACATAGCTGTGAAAATGGGATATCCCCCCAAAAGGGGTCATTCGCTTCTCCTCAAACACCACTATGATCGGATCCTGCGCCCTTATGACATATTTCGCAAAAATCCTCCAGGTGAGTCTGTCACTAAGCCCAAAAGAGAAACTAAATCTGAAGATGATGTCATTAAGCCCAAAAAGGAGCCTAAATCTGAGGATGAAGAAGGTGAAGAATATAAGCAACATCAGATTCCAAGTCGACAAGCCATAGAGCCACCAATGAGCCAAAAGTCAGCCAGACGCTCTAAGCGCTATGGGCCCTGTGATCCTGTGAAGGAAGCGTCTGATTCGACTTCCCCTGACAGCAAGGAACTACGCAGACTCCTTTTCTATGGTGCAGGTCCTAAAATGGCAGGTTACAATGAAAAGCAGTCCCCTAAAAAGAAGAGCCCCAAGAAAGGATTTCATGAATTTGATCCTCTGGCAAATCTTCAGCAGTTCTGTGAAATGGCTGATCGCTTCAAATCTGAATATTTTAATATGCCTGTCCATGTTGTGCCCACATCTCTGGTGGAAAAAGAATTTTGGCGTCTTGTTTCTTCCATTGACGAAGATGTAACTGTTGAGTATGGAGCAGATCTGCACACTATGGATCATGGGTCTGGGTTTCCAACCAGCACAAGTGACACAACATGTGAATATGCAAAGTCTAAATGGAATCTCAATAATTTGCCAGTGCTGGAGGGTTCTGTCCTTGGACACATCAATGCTGATATATCTGGCATGAAAGTACCTTGGATGTATGTTGGTATGTGTTTTGCCACTTTTTGTTGGCACAATGAAGATCATTGGAGTTATTCAATTAATTACCTGCATTGGGGTGAACCAAAAACCTGGTATGGAGTGCCTGGAAGTTCAGCAGAAGCATTTGAAGAAACAATGAAGGGGGCTGCGCCAGAGCTGTTCCAGTCTCAGCCTGATTTATTGCATCAGCTTGTGACTATCATGAATCCTAACATTCTCATGAATGATGGAGTCCCAGTATTCCGCTGTGACCAACATGCTGGAGAGTTTGTTGTCACATTCCCCCGAGCTTATCATGCTGGCTTTAACCAAGGCTTTAACTTTGCTGAAGCTGTTAACTTTGCTCCAGCCGACTGGTTGTCTATAGGCCGTGACTGCATTACTCATTACTCAAAACTGCGGCGGTTCTGTGTCTTCTCACATGATGAGCTAGTGTGCAAGATGGCATCAGATCCTAAAGAATTGGAACTTGGGGTTGCTGCTGCTGCATTCAAAGACATGCATGTCATGGTTGAGAGTGAAAAGAAGTTAAGGAAGTCTCTTTTGGAGTGGGGAGTACGCACAGCAGAGCGTAAAAACTTTGAGTCCATGCCTGATGATGAAAGACAGTGTGAAGTGTGCAAAACTACATGTTTTTTGTCAGCTGTAACATGTGATTGCCCCACAGCCAATCCTAAAGGTCAGCAACGTTTGCTGGCCTGTTTGCGGCACTATTCTGAACTTTGTCGTTGCGATGCTGCAAAACATACACTCTGGTACAGATACACTCTTGATGAGCTTCCAGTAATGCTTCGGGATATCAAGCTAAGAGCAGAATCATTTGACAACTGGGTATCTTCTGTTAAAGATGCTCTGGACTTTAATACTCCCAAAACTCTTGACCTGGCAGGTTTTAAAGCATTGCTACAGGAAGCTGAAGATAAAAAGTTTCCGGACTCTGAGCTTCTCCAGGCCTTGAGAGTGTCTGTGCAGGAGGCAACTAAGTGTGCTAATGTTGCAGCCCAGTTAGGAGGCAGGAAGACCCGGAACAGAGCACGCACTTCACAAGAACCAAGACTGAAATTGACTGTAGAAGAGCTGCAGCTTTTCGTTGAAGAAATTGATGAACTACCATGCATCTTAAGAGATGGTGCTGCAGTGAAGGATGTTTTAGAGAAGGTGAAGGAATTCCAGACTAAAGCAGCTGTCTTGATGAGCAAAGACCCTTGCATTGAAGAGAGAAGAGGAAAAGAAGTGCGAGAAGTATTAGATCTTGGTCTCAATTTGGATGTTGAACTTCCAGAACTTCTACCCCTTAAGGACTTGTGCGTGCAGGAAGAATGGCTTGACAAGGCTTTACGGCTTCAAAATGCTGTGGCAGACTTAGATGAAGTAAGTGCCTTGGTTACTACATGTGATGAGCTGCCCACTCCAAGGAACCCTGTAATTGAACAACTTCAGGAAGAATTTTCAGAGCTTGAATCAAGAGCCCGTAATTGGCAAACAAGAGCTAAAGCAGCTCTACAGGAGGCGTGTCTTGAGAAACTTGAGACCCTTGACAAAGAGGCAGAAGAAATGTCCATATTTGTCTCTGAAATGACAGCAGTTGAGGATGCAGTTAAAACAGCTGCAAAGTGGAAAACCCAAGCCGCTGAGCTTCGAGCTGTGCCAGATGGACCTGAACTAGAACTGGTTGAGGCATTAGTACTGAGAGGGCAAGCATGCCCAGCCAGGCCACCAGGCCTAGCTGAGTGGGAGGAGCGCATCAGAACTGCCCGAGCTTGGAGAGAAAAAACCTTCCGTACCTTTATGTTTAGAGATTCCCCTCTGTCTCTTGTTGAGGCCTTGCTTCCTCGCACGGAGGTTGGAGTGGATGGCGTTCCTGTGAAGCGGGATAAGGATCCTGTCAAGGATGAGACGGCGGCTGTTCTCGACATTCAAGAGATCAACATCCAGAAAAGACTGAAAGATAATCAGGATAAGACATACTGCATTTTCTTCAAACTTCTTGCAAGCATTCAAAAATTGAATGTCCAAATGGTTGAGGCTCGTGTTGTTCATAGTCTTTGTCAAAGAGCCCTCAACTGGAAATCCAAAGCTCGCAAAATGTTAGCTCAAGGAGATCTTTATGTTCCAAACCCAGCTGCCATTGGAGAGCATACCTATTCAGCTGCCTCAGCCTTGTCTCCCAATAAACACATGAGGAAGTCTCCTTTGGTGCCCAGACAAGATAAGACAGCATCAGTTTTGAACGATCAGTCTCGAATTCAACTTGAATTACTGATGCTAGAAGGTGATCTCATGGAATTAGATCTTGAAGAAAATACCATGATCTGGAATATGCTTAGAAACTCTGAGGCAAATGCTGAAAGCTCGTCAATGGAACCTGATGAACTTGATGTGAGAGTGGAGGCTGAAGCCAGTCAAGAGTTGAAGAGTAAAGAATTGGAGCGGTTTAGAGACAAGCAGAGACGGCTGAAACGTAAAGCAGATGATGACAAAAATAGGCGACGAGGTGGGAAGCCCAAGAGGGCCAAGAAACCTACCAGGCAATCCAGTCAAGAAGCTTCCAGTGACAAACCTGCTGCTGAAGGGGAAGAGGAGGAAGAGGATGAAGACTGCTCCGCCATGCCATGTCTCCGCCCTACTGGTGAGGTGACTTGGGTTCAGTGTGATGGAGCTTGTGAGCTATGGTTCCATTTGCATTGTGTGGGGCTCGATCAAGGTGACATCTCAGAGCAGGAGGATTACATCTGCTCTCAGTGTAATGGACCAAATCCTGAGCAGCGCATGCAAATGATGGTTGTGATGGGTTCAACAACACCGCCCTCTCCCACAGAATCTTCACTTCTCACCACTTCACCACAAAGTAGTACTCCAACTTAA 3648 0.4553 MDIAVKMGYPPKRGHSLLLKHHYDRILRPYDIFRKNPPGESVTKPKRETKSEDDVIKPKKEPKSEDEEGEEYKQHQIPSRQAIEPPMSQKSARRSKRYGPCDPVKEASDSTSPDSKELRRLLFYGAGPKMAGYNEKQSPKKKSPKKGFHEFDPLANLQQFCEMADRFKSEYFNMPVHVVPTSLVEKEFWRLVSSIDEDVTVEYGADLHTMDHGSGFPTSTSDTTCEYAKSKWNLNNLPVLEGSVLGHINADISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGEPKTWYGVPGSSAEAFEETMKGAAPELFQSQPDLLHQLVTIMNPNILMNDGVPVFRCDQHAGEFVVTFPRAYHAGFNQGFNFAEAVNFAPADWLSIGRDCITHYSKLRRFCVFSHDELVCKMASDPKELELGVAAAAFKDMHVMVESEKKLRKSLLEWGVRTAERKNFESMPDDERQCEVCKTTCFLSAVTCDCPTANPKGQQRLLACLRHYSELCRCDAAKHTLWYRYTLDELPVMLRDIKLRAESFDNWVSSVKDALDFNTPKTLDLAGFKALLQEAEDKKFPDSELLQALRVSVQEATKCANVAAQLGGRKTRNRARTSQEPRLKLTVEELQLFVEEIDELPCILRDGAAVKDVLEKVKEFQTKAAVLMSKDPCIEERRGKEVREVLDLGLNLDVELPELLPLKDLCVQEEWLDKALRLQNAVADLDEVSALVTTCDELPTPRNPVIEQLQEEFSELESRARNWQTRAKAALQEACLEKLETLDKEAEEMSIFVSEMTAVEDAVKTAAKWKTQAAELRAVPDGPELELVEALVLRGQACPARPPGLAEWEERIRTARAWREKTFRTFMFRDSPLSLVEALLPRTEVGVDGVPVKRDKDPVKDETAAVLDIQEINIQKRLKDNQDKTYCIFFKLLASIQKLNVQMVEARVVHSLCQRALNWKSKARKMLAQGDLYVPNPAAIGEHTYSAASALSPNKHMRKSPLVPRQDKTASVLNDQSRIQLELLMLEGDLMELDLEENTMIWNMLRNSEANAESSSMEPDELDVRVEAEASQELKSKELERFRDKQRRLKRKADDDKNRRRGGKPKRAKKPTRQSSQEASSDKPAAEGEEEEEDEDCSAMPCLRPTGEVTWVQCDGACELWFHLHCVGLDQGDISEQEDYICSQCNGPNPEQRMQMMVVMGSTTPPSPTESSLLTTSPQSSTPT 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000243g0002 1215 Pfam C5HC2 zinc finger 465 523 IPR004198 -
Alju1000243g0002 1215 ProSiteProfiles JmjC domain profile. 226 392 IPR003347 -
Alju1000243g0002 1215 Coils Coil 1070 1090 - -
Alju1000243g0002 1215 Gene3D Cupin 100 398 - -
Alju1000243g0002 1215 MobiDBLite consensus disorder prediction 1067 1130 - -
Alju1000243g0002 1215 CDD PHD3_KDM5A_like 1128 1176 - -
Alju1000243g0002 1215 MobiDBLite consensus disorder prediction 29 116 - -
Alju1000243g0002 1215 SMART cupin_9 226 392 IPR003347 -
Alju1000243g0002 1215 MobiDBLite consensus disorder prediction 40 77 - -
Alju1000243g0002 1215 MobiDBLite consensus disorder prediction 1193 1215 - -
Alju1000243g0002 1215 Pfam PLU-1-like protein 537 868 IPR013637 -
Alju1000243g0002 1215 PANTHER LYSINE-SPECIFIC DEMETHYLASE 131 1081 - -
Alju1000243g0002 1215 Pfam JmjC domain, hydroxylase 259 375 IPR003347 -
Alju1000243g0002 1215 MobiDBLite consensus disorder prediction 95 116 - -
Alju1000243g0002 1215 MobiDBLite consensus disorder prediction 1067 1092 - -
Alju1000243g0002 1215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1125 1184 IPR013083 -
Alju1000243g0002 1215 Coils Coil 737 764 - -
Alju1000243g0002 1215 MobiDBLite consensus disorder prediction 135 149 - -
Alju1000243g0002 1215 SUPERFAMILY FYVE/PHD zinc finger 1119 1184 IPR011011 -
Alju1000243g0002 1215 MobiDBLite consensus disorder prediction 129 149 - -
Alju1000243g0002 1215 SUPERFAMILY Clavaminate synthase-like 227 419 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000243g0002 131 561 JUMONJI Transcription Factor Family AT4G20400 39.530 2.35e-93 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Alju1000243g0002 PLU-1 4.9e-57 No_clan