Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000216g0020 ATGATGGAGGACAGTTCTGTTCCCGAGGCGTGTTTCTCCGGGCACGTGCCCAACGTCAACAACAACTGCAGCAAGTCGAAGGCGGCAGCACTGTTCCTACGCCAGGACAGCGCCGGCTCCACGACGTCAGACGAGGAGTACATGTACGTTTCAATGGCATGTGGTGATTGCGGCGACCTGTTCCCTACGTGCAAGGAGCTGTTGCTGCATCGGCTGGCGATACACGCAGACCGTAGGCCGCACCAGTGCCCTGCTTGCATGGCCGCTTTCTGGCAGCCGGAGCTACTGCGCCAGCACAAGCGCACGCACACTGTAGACACGCCGCACGCATGTGCCCATTGCAACCTGCGCTTCACTCTTCGATCTCATGTCATTGCCCACACCCGCGCCTTGCATTTGCCGAAGAAGGAGCAACTGAGCCAGGAACACCGGTGCTCAGAGTGCGCAGACCGAGTCTTTCAGTCCGCATCCAAACTTCATAACCATATGAGATGCCATTCTGAAGAGAGATTAGCTTGCAAAGATTGTGAAAAGACCTTTAGATACCCACACAACCTTGGTCGACACTCCAGGAAGCATCATTTGTCTGAAGTTTGA 597 0.5561 MMEDSSVPEACFSGHVPNVNNNCSKSKAAALFLRQDSAGSTTSDEEYMYVSMACGDCGDLFPTCKELLLHRLAIHADRRPHQCPACMAAFWQPELLRQHKRTHTVDTPHACAHCNLRFTLRSHVIAHTRALHLPKKEQLSQEHRCSECADRVFQSASKLHNHMRCHSEERLACKDCEKTFRYPHNLGRHSRKHHLSEV 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000216g0020 198 ProSitePatterns Zinc finger C2H2 type domain signature. 111 132 IPR013087 -
Alju1000216g0020 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 80 IPR013087 -
Alju1000216g0020 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Alju1000216g0020 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 137 IPR013087 -
Alju1000216g0020 198 PANTHER ZINC FINGER PROTEIN 21 194 - -
Alju1000216g0020 198 Pfam Zinc finger, C2H2 type 173 193 IPR013087 -
Alju1000216g0020 198 Gene3D Classic Zinc Finger 100 132 - -
Alju1000216g0020 198 Gene3D Classic Zinc Finger 133 198 - -
Alju1000216g0020 198 SUPERFAMILY beta-beta-alpha zinc fingers 75 127 IPR036236 -
Alju1000216g0020 198 ProSitePatterns Zinc finger C2H2 type domain signature. 173 194 IPR013087 -
Alju1000216g0020 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 171 IPR013087 -
Alju1000216g0020 198 ProSitePatterns Zinc finger C2H2 type domain signature. 54 75 IPR013087 -
Alju1000216g0020 198 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Alju1000216g0020 198 SUPERFAMILY beta-beta-alpha zinc fingers 152 195 IPR036236 -
Alju1000216g0020 198 SMART c2h2final6 52 75 IPR013087 -
Alju1000216g0020 198 SMART c2h2final6 109 132 IPR013087 -
Alju1000216g0020 198 SMART c2h2final6 81 103 IPR013087 -
Alju1000216g0020 198 SMART c2h2final6 143 166 IPR013087 -
Alju1000216g0020 198 SMART c2h2final6 171 193 IPR013087 -
Alju1000216g0020 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Alju1000216g0020 198 Gene3D Classic Zinc Finger 49 99 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju1000216g0020 zf-C2H2 0.0014 CL0361