Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000199g0006 ATGCACCCGTGCCTCAACCCCTACCCAAACAAATGCGACGACTGGGTCTACGTGAGGGATGTTGAGCGTTGCGAGGTGTACCGAGGAGACGTCGTCACCTTCATCCCCCCAAAGGACCCCTCAGCTCACTTCATCAAGCGTGTCATTGGCCTCGAAGGCGACACAATTTTGAAACAGGAGGGTCCATCGACCCGACTCATCACTGTACCTTCAGGGCATTACTGGGTTGAAGGAGATAACAAGAAGTTGTCAATAGATTCTCAGCAGTTTGGGCCCATCCCAAGTATAGATCTCAACATGCGTGCTGTCTGTTTTGTCAATCGTCTGGAGTTTGAATTTGGGGGCAATGTTTTCCGAAGCTCTCTTACCCTTGGAGATGTTGACAACAGTGGTGAAATGGCTCTAGTTGCAGGAAATGCCAGCGGTGATCTAGCAGTGTTTAAGGGAGACAAACAATGGCAGGTAATAAGTGGTCTAGGAATGATAACGGCAGTTGGGGTTGGCGACATCCTCAACTGTGGAATGAATGCTGTAGTTGTGATATGTGGTGATGGCTGGTGCTACATTTATCTTTGCCCTCCTGGATGCTCAAGATTGGACTGTGTTCATGTTCAGAGAATCCCTGCAAATACAAAGGTCCTTTTGCTCGGGGATATTGATGATGATAATCAACAGGAGCTGGTCCTAGGGCTCACCGATCGTGTGGTTCGCTCTTATCGTTGGTGTTGGGTAGGCATACCAGTGACCAAGGAAAATATATTGGCACTAGGTAAAACAAGTGTTGGATCATTAGCAGGACGGGGAGCTTTGGTCTGTCTCAATAAATGGGAGTTTGCCCATCAATTGGGTGCTGTCACTCTTAATCATCAAGCTGATGGAAAACCAAATCTTTTAGTGGCTCAACCTGGAGGCACTTTTATGAGGATAAGGTGCTATGCTGAGCCTGATAAGACTGAACTTTCTGACTCAGAAAGTATTGGAAGTAACAGAATTAATTCATTTGGTGAAACCTCGGTTGATTACCACCCACTTTGCCTTAACAGTATGAGAAACCCAAATGTTTCAACTGAGATCTTGGGCGATATTGAAACTGGCCGTGGGGATAATAAAGGCTCTCCATTTGCTGTTGCCACTCTTGATGGAACTCTAATGCTGGTTCATAATGATGATGAAATTTTGTGGTCTTATCAAGTTGACCATCAACTGTTTGCTGTTACAAAGCTTGATATAACTGGTGATGGCCATGATGAAATTGTTGTGTGTTCTTGGGATGGACAAACATACATACTAGACTTGGAAAAGCACAGTGTGCGCTTTCAACTCGAAGAAACTGTGTCAGGGTTTTGCTCAGGCAAATACACTATGGAACCCAACTGTGGAAAACCTGCCATCCCTGTTCTTGTTTATGCAACCTTTAACAACAAAGTTCCTTCCTACTTGGTGGATAACCCCATTGTTGATTCAGGAAATCTCAAAGTACTTGTTCCGTATCATTTTAAGTTTTTTATTATCACCCTTCTGATGTAG 1527 0.4466 MHPCLNPYPNKCDDWVYVRDVERCEVYRGDVVTFIPPKDPSAHFIKRVIGLEGDTILKQEGPSTRLITVPSGHYWVEGDNKKLSIDSQQFGPIPSIDLNMRAVCFVNRLEFEFGGNVFRSSLTLGDVDNSGEMALVAGNASGDLAVFKGDKQWQVISGLGMITAVGVGDILNCGMNAVVVICGDGWCYIYLCPPGCSRLDCVHVQRIPANTKVLLLGDIDDDNQQELVLGLTDRVVRSYRWCWVGIPVTKENILALGKTSVGSLAGRGALVCLNKWEFAHQLGAVTLNHQADGKPNLLVAQPGGTFMRIRCYAEPDKTELSDSESIGSNRINSFGETSVDYHPLCLNSMRNPNVSTEILGDIETGRGDNKGSPFAVATLDGTLMLVHNDDEILWSYQVDHQLFAVTKLDITGDGHDEIVVCSWDGQTYILDLEKHSVRFQLEETVSGFCSGKYTMEPNCGKPAIPVLVYATFNNKVPSYLVDNPIVDSGNLKVLVPYHFKFFIITLLM 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000199g0006 508 CDD S26_SPase_I 14 94 IPR019533 GO:0004252|GO:0006465
Alju1000199g0006 508 PANTHER INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING 100 479 IPR031793 -
Alju1000199g0006 508 Pfam Integrin-alpha FG-GAP repeat-containing protein 2 150 479 IPR031793 -
Alju1000199g0006 508 PRINTS Bacterial leader peptidase 1 (S26A) family signature 69 88 IPR000223 GO:0006508|GO:0008236|GO:0016020
Alju1000199g0006 508 PRINTS Bacterial leader peptidase 1 (S26A) family signature 44 56 IPR000223 GO:0006508|GO:0008236|GO:0016020
Alju1000199g0006 508 SUPERFAMILY LexA/Signal peptidase 1 95 IPR036286 -
Alju1000199g0006 508 SUPERFAMILY Integrin alpha N-terminal domain 110 230 IPR028994 -
Alju1000199g0006 508 Gene3D Umud Fragment, subunit A 1 117 - -
Alju1000199g0006 508 ProSitePatterns Signal peptidases I signature 3. 74 87 IPR019758 GO:0004252|GO:0016020
Alju1000199g0006 508 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 292 443 IPR011047 -
Alju1000199g0006 508 Pfam Signal peptidase, peptidase S26 67 103 IPR019533 GO:0004252|GO:0006465
Alju1000199g0006 508 Pfam Signal peptidase, peptidase S26 25 56 IPR019533 GO:0004252|GO:0006465
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000199g0006 28 94 MADS-box Gene Family AT1G29960 42.254 1.25e-09 54.3