Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000165g0014 ATGCCGGCTGGCGCTACGGCCGACTTCAGTATGGGCCTTATCCCTTTTCGGCGACTGGACTTGACGTACCGTGATCAGCCCCACGTTTTTCGGGAAAGGTATTTGAGAGGTTATTTCTTGTCGGCTGCTATCGGTCCCATAGGTCACTTGGTCGGCGCCTTGATCCGAGCGAATGACAGCAAGGAGGATGTCTTTGTACACCAATCAGCCATTGTTAAGAACAACCCTAAGAAAGCAGTGCGAAGTGTTGGGGATGGTGAGGTGGTTGAGTTTGATGTGGTTGTGGGAGAGAAAGGTAATGAAGCAGCCAATGTCACCGGTCCTGCTGGTGAGCCTGTGAAGGGCTCTCCGTATGCCGCTGACAAGCGCCGTGGTTACCGGCAATGGTACTACGGAGGACGCGGCCGCGGAATGCGCCCCCGCCGTGAAGGATATGAAAGTGGAGATGGTGGGAAAGGAGAGGAGGGAGGAGAAGGTGAGGGTGGCCAACAGCAGCAACAGAGGCGATACAGACCAAGGCGCCGCTTTGAGCCCAACAACTACTACAACAACTACCGTGCTCGCAAACCACAGCAGCAAGGAGAGGAGGGCAAGGAAGGAGAGGAAGGTGGAGAAGGTGGTGAGGGTGGTCGCCCATCTCGTGGCAGGGGTGCACCACGCCGTTTCTTCCGCCGTAACTTCCGTGGCGGACGGGGTGGACCACCTCGCCGACCAAGGAGTCAGGATGGGCAGAATGTGAGCGAGGGAGAGGGTGGTGCAGAGGGAGCCCGGCCCCGCCCACGCTATCGTCGACGCCCATCCCGCCCCTCTCGCACCAGCCAAAGCGAGGGAGAAAATAAGGTCAAGCCTGAATCAGCGGATGCCCAGTCTACACCGGCCCAAGATTCATCGCAATCTGTGCAGCACACCACTACTACTGAGAGTTCAGCGTGA 933 0.5798 MPAGATADFSMGLIPFRRLDLTYRDQPHVFRERYLRGYFLSAAIGPIGHLVGALIRANDSKEDVFVHQSAIVKNNPKKAVRSVGDGEVVEFDVVVGEKGNEAANVTGPAGEPVKGSPYAADKRRGYRQWYYGGRGRGMRPRREGYESGDGGKGEEGGEGEGGQQQQQRRYRPRRRFEPNNYYNNYRARKPQQQGEEGKEGEEGGEGGEGGRPSRGRGAPRRFFRRNFRGGRGGPPRRPRSQDGQNVSEGEGGAEGARPRPRYRRRPSRPSRTSQSEGENKVKPESADAQSTPAQDSSQSVQHTTTTESSA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000165g0014 310 ProSiteProfiles Cold-shock (CSD) domain profile. 42 107 IPR002059 GO:0003676
Alju1000165g0014 310 MobiDBLite consensus disorder prediction 136 156 - -
Alju1000165g0014 310 Pfam 'Cold-shock' DNA-binding domain 55 107 IPR002059 GO:0003676
Alju1000165g0014 310 SMART csp_8 51 108 IPR011129 GO:0003676
Alju1000165g0014 310 MobiDBLite consensus disorder prediction 269 283 - -
Alju1000165g0014 310 PRINTS Cold shock protein signature 62 71 IPR002059 GO:0003676
Alju1000165g0014 310 PRINTS Cold shock protein signature 81 99 IPR002059 GO:0003676
Alju1000165g0014 310 MobiDBLite consensus disorder prediction 284 310 - -
Alju1000165g0014 310 MobiDBLite consensus disorder prediction 130 310 - -
Alju1000165g0014 310 Gene3D - 52 110 IPR012340 -
Alju1000165g0014 310 MobiDBLite consensus disorder prediction 191 209 - -
Alju1000165g0014 310 MobiDBLite consensus disorder prediction 217 232 - -
Alju1000165g0014 310 SUPERFAMILY Nucleic acid-binding proteins 55 106 IPR012340 -
Alju1000165g0014 310 PANTHER COLD SHOCK DOMAIN CONTAINING PROTEINS 55 298 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Alju1000165g0014 CSD 1.5e-13 CL0021