Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000144g0001 ATGCCGTTCAACGGCGAGGCCACAAACGACCTCAGCCCTCTCCTGCTACCGGAGGGATGGATGCTCGGCGGCGCCCCCCTCCCCAGCCCCGCGCCCCCTGCCGTCGTGCTCCCCCAAGTGCCTCCCAGGGCGTGCCAGCCAGCGAGTAGGAGCTGTGTGCGAAGGGCTTCTCGTCGGCGGCCCCGCGGCCATTCAGATCGGGCAGCGCCGCGACGCGAAGCTCGGCGGCAGACGCGTCGTCCGTTGGAACGGAGGGGGAGGGGGGAGGTCACTGCTGCAGCTGTCCTGCTGGAGGCGGCGGGCCGGAGGGCGCAAGACGCAGCGGTGCGGGCCGCAGCCCCGGCCTGGAGCGGGGCGCGGGGATGGGGCCGACCCTGCCAGCCCGCCCCCCACACATACCTCACCTCACCTTGCTACTCGCTTTTCGGCCCGCCGGGCCAGCGCTGCGCCCTGCCTGCACCGCCCTGCGCTGCCTGGGCCGGAGCACAGCGCATGGACTGGGCACCACGGCGTCGGGCCGTCGGGGCCGCCATGGCCAAGCCAAGGACGGCACGTTGCCGATCCGGTTCGGACCCCTCCCGCACCGTGATCCCCTTATCGCGCGTAAGCAGCGCGAGGACTGTGGACTCTCCTATCCAGCTCCAGGCCCTCCAGGCCCTGGCTGTGCCCTGCTGGAATGCCTCCGGAAGCCGGAACCGGGACGCCGGACCGGGCCTGGAGGAGGCTGAGGTCGTCGCCGTGGTCGCCCCCTGCGAGCCGGCGACTCGTGGGAGACTCCAGCAACTCCAGCCGGCTCTGGCCAGCAGGCCGGGCCGCGTTAGCCTAGTCAGCTGGCCGGAGGGAAGGACTAGGTCCTGCGGCATCGTCGCCGGTTTGCGGATCTGCCGAGACCGAGAGGACCTTTTCCTTTGCCGAGGCTCTGTCTGTCCGTGGCCGTCGAGGAAGTCTGAGGCTCCGCGCCTCGAGCACCGCAAGGAGGAGAAGAAGGCCCTCTCCCTCCCACTGCGGCTCGGGAGGATACGCTCCGCTCGTGGCGCAGGGGCTGGGCTGCGAGTCCCAAATCGGATGACGCCACCGCCCCCCTGCCCTCCCCCAGGCCAGCCGCCGGTCTGCGTAGCTGCTAGCTCTGGCAGTGGCGCCGCTGGGCGCCGCGCGGGGTCTACCAACGCGGTCGGTCTACCGGCACTCCCAGGGCCAGGCAGGCAGGCCGCGCGCCGCGTTGGCTCCGCGTTCGCCGGCCAGGCCAGGCCAGCCACAGTTGCCGCTGTGCGCCGAGCCCCGGGCTGGGTCGGGCTCCCCTTCCCTTCCCTCTTCCTCCCGCTCCACTACGGTGCACCGCGCACCGCGGCGCGCGGCGCGGTCTGCTCGCGCTTTGCGCTCCGCTCCGCTCCGTTCGGCCCCGAGGCCATGTCCGCCGTCATGCCGCCTCCTCCGCGGAGGCCGGGACCCGCCCCCGCCCCCGCCACCATGGCCAAGGCCATCGTCCTCGTCCCGTCCGCGAAGTCGTCGTCGTCCTCTAAGGTGTGTCGGAGGCCCAGGCCATCGGGATTTCGGGTCGGCTTTCCTGCCCGGCCCGGCCCGCGCCCCGCAACTGCACTTGCGTTGCGTCGTAGTTTGGAGGGCACAACATTATTGGCTGGTGGTCAGCTCATCCGAACTCTTAATTTAGCAAAACAATCTGGGCAAAGCCCCAGAGTCATGACACTTCAGACTGTTCAAGGCAGCCCCGATGAAAGTTATGGGCAGTGTCCCAAAAACAATTACTCTTACACCAGCACAAATGTCAGCTCCAACATTTCACACACATCTGCCAATGTAATCCAAACTCAAGCTACCATGCAGCAACAAACTCAGGTTGTTCAAGCTCAACATTCATCACAACCTTCAGCACAGCAACTTAGTCAGCCGTCATCCAAGAATTACATTTCCCCTATACTGGACCACAGTGGCTCGCGTAAACGCCACGATATGGAACAGGAACATGTGCCTGCCTACAAACGGCGAAAATCAGACAAAGTGGGGAAAGGTCTCAGACACTTCTCCATGAAAGTGTGTGAGAAAGTTAGGAAAAAGGGTACCACATCCTATAATGAGGTTGCAGACGAGCTTGTTGCTGAGTTTACCAACCCAAGCAACCTTCATAATAACTCACCTTCAGACCAGTATGATCAGAAAAACATCAGGCGAAGAGTCTATGATGCCTTAAATGTGCTTATGGCAATGAATATAATATCCAAGGAAAAGAAAGAAATCAGAATGGAATATCTGTTCAACTTTGATGACAAGTTTGAAATTCATGACGATATTGAGGTTCTTAAACGAATGGGAATGGTTCTAGGTCTTGACAAAGGAGAATGTACACCAGAGGAACTGGTGAAGGCTAAGAGTATGGTTCCACGAGCCCTTGAAAACTACGTTGTTCAACTAGCTCAAGGAAATACCGAACCAGACTTGCCAGAGCTGTCAGCAGGGCCTAGTTCATCATCAGTGAATGCATCATATTTAGTTGACGAATTTGATGCACCAATGGGCCTCTCTCGCCACTCATCACACACAGACCTATCTGAAGAACCTCTGTCCCCATCACTTGAAACATATTCAGATGATGATTCAGAAATGTCAAGTGATGTGGAAATTCACTAG 2643 0.6118 MPFNGEATNDLSPLLLPEGWMLGGAPLPSPAPPAVVLPQVPPRACQPASRSCVRRASRRRPRGHSDRAAPRREARRQTRRPLERRGRGEVTAAAVLLEAAGRRAQDAAVRAAAPAWSGARGWGRPCQPAPHTYLTSPCYSLFGPPGQRCALPAPPCAAWAGAQRMDWAPRRRAVGAAMAKPRTARCRSGSDPSRTVIPLSRVSSARTVDSPIQLQALQALAVPCWNASGSRNRDAGPGLEEAEVVAVVAPCEPATRGRLQQLQPALASRPGRVSLVSWPEGRTRSCGIVAGLRICRDREDLFLCRGSVCPWPSRKSEAPRLEHRKEEKKALSLPLRLGRIRSARGAGAGLRVPNRMTPPPPCPPPGQPPVCVAASSGSGAAGRRAGSTNAVGLPALPGPGRQAARRVGSAFAGQARPATVAAVRRAPGWVGLPFPSLFLPLHYGAPRTAARGAVCSRFALRSAPFGPEAMSAVMPPPPRRPGPAPAPATMAKAIVLVPSAKSSSSSKVCRRPRPSGFRVGFPARPGPRPATALALRRSLEGTTLLAGGQLIRTLNLAKQSGQSPRVMTLQTVQGSPDESYGQCPKNNYSYTSTNVSSNISHTSANVIQTQATMQQQTQVVQAQHSSQPSAQQLSQPSSKNYISPILDHSGSRKRHDMEQEHVPAYKRRKSDKVGKGLRHFSMKVCEKVRKKGTTSYNEVADELVAEFTNPSNLHNNSPSDQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRMEYLFNFDDKFEIHDDIEVLKRMGMVLGLDKGECTPEELVKAKSMVPRALENYVVQLAQGNTEPDLPELSAGPSSSSVNASYLVDEFDAPMGLSRHSSHTDLSEEPLSPSLETYSDDDSEMSSDVEIH 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000144g0001 880 PANTHER TRANSCRIPTION FACTOR DP 753 837 IPR015648 GO:0005667|GO:0051726
Alju1000144g0001 880 SUPERFAMILY E2F-DP heterodimerization region 749 814 IPR037241 -
Alju1000144g0001 880 SMART DP_2 721 817 IPR014889 -
Alju1000144g0001 880 MobiDBLite consensus disorder prediction 66 87 - -
Alju1000144g0001 880 MobiDBLite consensus disorder prediction 619 645 - -
Alju1000144g0001 880 Gene3D - 666 757 IPR036388 -
Alju1000144g0001 880 SMART E2F_TDP_2 672 755 IPR003316 GO:0005667|GO:0006355
Alju1000144g0001 880 SUPERFAMILY "Winged helix" DNA-binding domain 675 751 IPR036390 -
Alju1000144g0001 880 MobiDBLite consensus disorder prediction 42 87 - -
Alju1000144g0001 880 MobiDBLite consensus disorder prediction 504 524 - -
Alju1000144g0001 880 MobiDBLite consensus disorder prediction 648 673 - -
Alju1000144g0001 880 MobiDBLite consensus disorder prediction 845 880 - -
Alju1000144g0001 880 MobiDBLite consensus disorder prediction 619 673 - -
Alju1000144g0001 880 FunFam Transcription factor 666 758 - -
Alju1000144g0001 880 Coils Coil 879 880 - -
Alju1000144g0001 880 Pfam Transcription factor DP 752 809 IPR014889 -
Alju1000144g0001 880 Pfam E2F/DP family winged-helix DNA-binding domain 674 752 IPR003316 GO:0005667|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000144g0001 631 756 E2F-DP Transcription Factor Family AT5G02470 40.945 5.35e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Alju1000144g0001 E2F_TDP 8.7e-20 CL0123