Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000119g0015 ATGCCACCGTCGCCTCTCATGCCGTCTCAGCCTCTAGCGCCCCGGCAGACCTCGCCGCAAGGCTCCCGGCAGACTTCGCCCCCCGCGCCTCGCCTGTCTCCGCCCCAATCCTCGCCACCCTCTCAGCCGCCCCCCGCGACGCAGTCACCCCCTCAGCCTCCAGAAGTGGCCTCGCCGTCGGCACCCTCGCCGGCCGCGTCGCCCCCAGCGTCGGACTCGGAGGCGATGGCGGCCCACGCGGTGCCTGGCTCTCCCCGAGGCCCGCCGTCCTCCTCTCCCGACGCCCTCCCAGCCAGCTCCCCTCAGGGCCCCGTGCCCGCCGACGGCACCGTCCGAGAGTCCCCGCCGACGACCGCCCTCAACGGGCCCAGCTCCCTGGGCCCCAAGGCACGAGGAGCACCGTCCCCGGTGGGACCCTCAGTGGACGGAGGTAGCGTGCTGCGGGCACTCATGGCATGTCATGTCTTTAGAGTTGGGCAGTTTCCTTCTGTTGTTTTGTTGTTGAAGGGGCAAGCTGCCAGTTCCATTTATTTTGATTCTTTTATAATTTCTAGTGTTTTGCTCAAATGCCATGACAGTTCATGCTCGCCTACCCCAGGAGGACCGCCGCACCCACCCGCTCCGAGCACACCGGGTGCGCCGCCCTCAGGTCCTCCGACGCCTGGCCCCAGCATGCCCCCGCACGGCGCACCTTCGCCTAGGCCCCAAGGCATGCCCGGACCGCCGACGCCTGGCCCGGCTGGCACGCCGCCCCCGGGACCGCCGCCGAGCCACCCTGGACCACCATCAGGGCCTCCTGGACCCGGACACCCATCCGGCCCGCCTACAGGGCCGCCCTCAGGCCCGCCGATCGGCCCGCCACAACCCGGCCCACCTTCAGGCTCGCCTACCGGCCCGCCGTCAGGGCCTCCGAGCGGCCCACCGTCGGGGCCACCATCTATGCTCGCTGCTGGCATGCATGGCATGCCTCACGGGCCCCATGGACCACACGGACCACACGGCCCTCATGGCCCGCACGGGCCTCACGGCCCCCATGGACCTCACGGGCCTCATGGGCCTCACGGTGCTCACGGACCGCACGGGCCACATGGGCCGCACGGACATTCGGGACCGCCAGGGCCCCCTGGACCCCCTGGACCTCCCGGGCCTCCCGGACCCCCTGGACCTCCCTCTGGAGCGTCCGCGTCTGGACCGCCGGGTCAGGGACCGCCTGGCCAGCCGGGTACCGCGCCTACCCCTCCGCCGTCTGGCCAGCCAGGTCAGCCTGGTCAGCCTCCGCAAGGCCCTGGGCACGGCCCGCAAGGACCCCCTACAGGGGCTGCTGGCATGCCGGGCCCCCACGGGATGCCCCCAGGAGGACCCCCGCAAGGTCCACCCGGCCCGCCTGGCCCTCCCGGCATGCAGCAGAGGCCTGGTCCCACTCCCCCACCTGGCGGTCCTCCGGGTCCGCATCACCAGGGTACCATGATTCCACCTCAAGGCTCTCAGCCCCCGCAAGGACCGCCCTCAGGCCAAGGGCCTCACGGACCCATGCACCCGGGTAGTCCTATGGGATACCCTCCACACCCAGGTGCCATGGGACAGCACCCCGGCGGTCCGATGGGACCTCATCCAGGTCAGCATGGTGGACCTATGGGACCTCACCCTGGTGGTCCTATGGCACAACACCCTGGACATCCTGGACATGCAGCAGCAATGGCCGCTATGGGACAGCACGGCGGCCCTATGCAGCACCCTGGGTCTCCAATGCACCCAGGAATGGGTCAAATGGGCCCTATGGGCCCAATGGGTCCGATGGGACCAATGATGCAGGGCAGAGCAATGGGGCCGCACCAAGGACCCCTTGGACCAGGAATGCCCGTCCACCCTCAAATGCAGCAGGGTGGTTTGCCACCAGGTGCTCATCAAATCCAACAGCAAGTTCTCAGCAGCACTGGCAGCATCATGGGCAAGAATGCACGCACAACTACTTTACCCAAGCCTTGTGGAATTGATCCACTTGCTACACTTGATGAACGTGAAAGAAAAGTGGCTGAAAGAATCCAGATGAGGATTGAAATATTGAGCAATTTGCCTCCCACTCTGTCGGAGGATGACAAAATGCAGGCCCAAATTGAGCTGCGAGCACTTCGTGTTCTGAACCTACAAAGGCAATTAAGAAGTGACATTGTAGCTCACACAAGAATGATGACTACTCTAGAAACAGCCCAAAATATTAAGCTGTACAAACGAACAAAACGACAAGGCCTCCGAGAGGCTCGCGCTACTGAAAAACTGGAGAAGCAACTGAAGATAGAGGCAGAAAGGAAGAGACGTCAAAGGCATAAGGAATATCTGGATACTATTCTGCAACATGGTAAAGACCTCAAAGAATTTCATCGTAATAATTTGGCTCGTATTGGACGTGTCAACAAAGCTATGATGAATTACCATGCTAATGCTGAAAGAGAACAAAAGAAAGAACAAGAGAGGATTGAAAAAGAAAGAATGCGGCGTCTTATGGCTGAAGATGAAGAGGGTTACAGGAAGCTCATTGATCAGAAGAAAGACAAGCGCTTGGCGTTCTTGCTCTCTCAAACTGATGAATACATTGGAAATCTCACTGAGATGGTGAAGCAACACAAGCTGGATCAGAAGCGAAAGCAGCAGAGCAGTCAAAAGAGACGAAGGAGAAGGAAGAAGAAGACTGAGGGTGAAGGTGGTGAGGAGGGACAAGACAATGGTGAATGTGATGAGGATGAGGAAGAAGATTTCAGGGTTACTGTGAGAGAGGTAGCCACTGGTAAAGAGCTGTCTGGTGATGATGCACCATTAGCTAGTGAAGTTGATGCGTGGTTGGAGGTTCACCCAGAGAAGAAGGCATCTGAAGGGGCTAAGGAGGGTAGTGCTGATGAAAAAGGTGTCATCCAGAAAGCCAAGGTTGAAGATGATGAGTATGGAAAGAAAGGTGAAGAACATACATACTACAGTATTGCCCACACTATTCATGAGCATATCACTGAGCAAGCTGATATTCTCATCAATGGTAAAACTATTCAAACTATTGCTCTTATTACTTACCTTATGGAGAAGAAGAAAGTCAATGGGCCTTTCCTTATTATTGTTCCACTTTCAACTTTGTCTAACTGGGTTTTGGAATTTGAGAAGTGGGCGCCTTCAGTTATTGTTGTTGCTTACAAAGGATCTCCTCAGGTCCGTCGTTCCTTACAAGCTCAAATGAGGAATGCCAAATTCAATGTTCTTCTGACAACTTATGAATATGTTATCAAGGATAAAGCAATCTTAGCTAAGATACATTGGAAGTATATGATAATTGATGAAGGTCACCGTATGAAGAATCACCACTGCAAGCTAACTCAAGTTCTAAACACTCACTACATTGCTCCTCACCGCCTCCTCCTTACTGGAACGCCTCTGCAAAACAAATTACCAGAGCTGTGGGCATTGTTAAACTTCCTGCTACCCTCCATTTTCAAGTCTGTCAGTACCTTTGAGCAATGGTTTAATGCTCCATTTGCAACAACTGGACCAGATCTGTACCGTGCATCTGGTAAATTTGAGCTCCTGGATCGCATTCTTCCCAAGTTGAAGGCCACAAACCACAGAGTGTTACTCTTCTGTCAAATGACTCAACTTATGACAATCATGGAGGACTACTTGAACTGGAGAAATTTCTGTTACCTTCGTCTTGATGGTACAACTAAATCTGAAGACCGAGGAGATCTTCTCAAGAAATTCAACAGTCCTACTTCAGACTATTTCTTGTTCTTATTAAGTACCCGTGCTGGTGGTTTGGGTCTTAACTTACAAGCTGCAGATACAGTTATTATCTTTGACTCTGATTGGAACCCCCATCAGGACTTGCAAGCTCAAGATAGAGCTCATCGTATTGGTCAGCAAAATGAAGTGCGCGTTTTGAGGTTGATGACAGTGAACTCTGTTGAAGAGAGAATTTTAGCTGCTGCCAGATACAAACTTAACATGGATGAGAAAGTTATTCAAGCTGGTATGTTTGATCAGAAGTCTACTGGCTCTGAGAGACAGCAGTTCTTACAGACTATTCTCCATCAAGATGATGATCAAGATGAGGAAGAAAATGAAGTCCCAGATGATGAGGTGGTGAACCAGATGTTGGCTAGATCAGAGGCTGAGTTTGAGATTTTCCAAAAGATGGACCTGGAGAGGCGCCGTGAGGAGGCTAAGAGTGGTGTTCAAAGAAAATCTCGTCTTGTTGAAGAGAGTGAACTGCCTGAATGGTTACTCAAGGGAGAGGAAGAATTGGAACGTCTTGCTTATGAGGAGGAGGAAGCTGAGCAGCTCCTAGGCCGAGGCTCCCGACAAAGGAAAGAGGTTGACTACACTGATAGCTTGACAGAGAGAGAATGGCTCAAGGCCATTGATGATCTTGGGGACTTTGATGATGAGGAAGAAGAAGAGGAAGAGAGGCGCCCTGCTCCTAAGAAAGGACGAAAGAAGAGGAAAAAGGGTGATGATGATGATGAGGATGAACCATTGTCTGCTAAGAAGAGGCGTGCTGGTGCTGATAAAAATGCAACCCTTGATTCCAAAACCAAGAAACAAATGAGGAAAATAATGGATGTTGTCATTAAGCACACAGACAGGTACAGCACCTTCTACCTCTGCAATATTGTTCATTACACTGACTTAGAAGATCTTGAAAAAGATTTCATGCAACTTTGCAAGAATGCCCAACTGTACAACAAAGAGCAATCACTAATCCATGAAGATTCTATTGTTCTTCAATCAATATTTACGGATGCTCGTCAGCAGGTGGAGCAAGGAGTCATTGAATCTGATAACGAAAAAGATGATGATGAATCTGAACAAGAGTCTCGCCCCAAAAATAAAAGATCAGGGCGCCCTCCTAAAGTAGACAAAGGACGGCGGAAGCGGTCCCGCAATTCCGGGATTGACATGAAAGAAAACACAAGTAATCATGTCTTTGAGGACAACTGTCGGAAGCTGATTCTGTTTTTCCGTGAAATTGTTATGTCTGAACACTTATACGGGATTGTGATTGAGCAAGTGGGTGCGCTCCATGCTCCAAGTCTAGATGAATTTGAAACCCGTACAATAATAATGGGTACTGTTTGGCATGTGGGGAAAGGAAAAGATGTTGCTGAAGCTCTTATGGTCCATCATGTTGAAATTGTTGACAACATTTTGTTGATTGGAAGGAAAATCCAATGCATTGTCTCTGCACTAGATCTCTGCTGCCCCAGAATGCAAATAACATTATATGAGCGTGCTGTGACATTGGTTGCAGTGGCCGGGTCTTATGCCTTTCTCGCGCGAGTTTTTACACATGCTTGGAAGTTATTATTGAATTGA 5352 0.5239 MPPSPLMPSQPLAPRQTSPQGSRQTSPPAPRLSPPQSSPPSQPPPATQSPPQPPEVASPSAPSPAASPPASDSEAMAAHAVPGSPRGPPSSSPDALPASSPQGPVPADGTVRESPPTTALNGPSSLGPKARGAPSPVGPSVDGGSVLRALMACHVFRVGQFPSVVLLLKGQAASSIYFDSFIISSVLLKCHDSSCSPTPGGPPHPPAPSTPGAPPSGPPTPGPSMPPHGAPSPRPQGMPGPPTPGPAGTPPPGPPPSHPGPPSGPPGPGHPSGPPTGPPSGPPIGPPQPGPPSGSPTGPPSGPPSGPPSGPPSMLAAGMHGMPHGPHGPHGPHGPHGPHGPHGPHGPHGPHGPHGAHGPHGPHGPHGHSGPPGPPGPPGPPGPPGPPGPPSGASASGPPGQGPPGQPGTAPTPPPSGQPGQPGQPPQGPGHGPQGPPTGAAGMPGPHGMPPGGPPQGPPGPPGPPGMQQRPGPTPPPGGPPGPHHQGTMIPPQGSQPPQGPPSGQGPHGPMHPGSPMGYPPHPGAMGQHPGGPMGPHPGQHGGPMGPHPGGPMAQHPGHPGHAAAMAAMGQHGGPMQHPGSPMHPGMGQMGPMGPMGPMGPMMQGRAMGPHQGPLGPGMPVHPQMQQGGLPPGAHQIQQQVLSSTGSIMGKNARTTTLPKPCGIDPLATLDERERKVAERIQMRIEILSNLPPTLSEDDKMQAQIELRALRVLNLQRQLRSDIVAHTRMMTTLETAQNIKLYKRTKRQGLREARATEKLEKQLKIEAERKRRQRHKEYLDTILQHGKDLKEFHRNNLARIGRVNKAMMNYHANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYIGNLTEMVKQHKLDQKRKQQSSQKRRRRRKKKTEGEGGEEGQDNGECDEDEEEDFRVTVREVATGKELSGDDAPLASEVDAWLEVHPEKKASEGAKEGSADEKGVIQKAKVEDDEYGKKGEEHTYYSIAHTIHEHITEQADILINGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWVLEFEKWAPSVIVVAYKGSPQVRRSLQAQMRNAKFNVLLTTYEYVIKDKAILAKIHWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLNWRNFCYLRLDGTTKSEDRGDLLKKFNSPTSDYFLFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDDQDEEENEVPDDEVVNQMLARSEAEFEIFQKMDLERRREEAKSGVQRKSRLVEESELPEWLLKGEEELERLAYEEEEAEQLLGRGSRQRKEVDYTDSLTEREWLKAIDDLGDFDDEEEEEEERRPAPKKGRKKRKKGDDDDEDEPLSAKKRRAGADKNATLDSKTKKQMRKIMDVVIKHTDRYSTFYLCNIVHYTDLEDLEKDFMQLCKNAQLYNKEQSLIHEDSIVLQSIFTDARQQVEQGVIESDNEKDDDESEQESRPKNKRSGRPPKVDKGRRKRSRNSGIDMKENTSNHVFEDNCRKLILFFREIVMSEHLYGIVIEQVGALHAPSLDEFETRTIIMGTVWHVGKGKDVAEALMVHHVEIVDNILLIGRKIQCIVSALDLCCPRMQITLYERAVTLVAVAGSYAFLARVFTHAWKLLLN 1783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000119g0015 1783 Gene3D - 1178 1329 IPR027417 -
Alju1000119g0015 1783 Gene3D - 1009 1168 IPR038718 -
Alju1000119g0015 1783 SUPERFAMILY BRK domain-like 916 952 IPR037259 -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 28 66 - -
Alju1000119g0015 1783 Coils Coil 753 773 - -
Alju1000119g0015 1783 SUPERFAMILY Bromodomain 1517 1602 IPR036427 GO:0005515
Alju1000119g0015 1783 SMART bromo_6 1521 1600 IPR001487 GO:0005515
Alju1000119g0015 1783 Pfam BRK domain 916 951 IPR006576 GO:0005515
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 198 311 - -
Alju1000119g0015 1783 Pfam HSA domain 765 834 IPR014012 -
Alju1000119g0015 1783 ProSiteProfiles HSA domain profile. 763 835 IPR014012 -
Alju1000119g0015 1783 Gene3D - 766 841 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 873 917 - -
Alju1000119g0015 1783 Pfam Helicase conserved C-terminal domain 1185 1298 IPR001650 -
Alju1000119g0015 1783 Pfam Snf2-ATP coupling, chromatin remodelling complex 1394 1463 IPR029295 GO:0042393
Alju1000119g0015 1783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1099 1346 IPR027417 -
Alju1000119g0015 1783 Coils Coil 811 836 - -
Alju1000119g0015 1783 SMART helicmild6 1214 1298 IPR001650 -
Alju1000119g0015 1783 Gene3D - 915 955 IPR037259 -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 328 348 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 903 917 - -
Alju1000119g0015 1783 SMART bromneu2 763 835 IPR014012 -
Alju1000119g0015 1783 Pfam SNF2-related domain 1009 1179 IPR000330 GO:0005524|GO:0140658
Alju1000119g0015 1783 SMART ultradead3 984 1167 IPR014001 -
Alju1000119g0015 1783 SMART SnAC_2 1393 1463 IPR029295 GO:0042393
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 193 637 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 13 27 - -
Alju1000119g0015 1783 Coils Coil 1420 1440 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 540 554 - -
Alju1000119g0015 1783 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1188 1349 IPR001650 -
Alju1000119g0015 1783 Gene3D - 1548 1628 IPR036427 GO:0005515
Alju1000119g0015 1783 Coils Coil 1556 1576 - -
Alju1000119g0015 1783 CDD SF2_C_SNF 1183 1309 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 1471 1525 - -
Alju1000119g0015 1783 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1009 1156 IPR014001 -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 1602 1649 - -
Alju1000119g0015 1783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1175 IPR027417 -
Alju1000119g0015 1783 PANTHER SNF2/RAD54 HELICASE FAMILY 1179 1512 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 494 520 - -
Alju1000119g0015 1783 FunFam probable global transcription activator SNF2L2 isoform X1 766 841 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 1 139 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 365 487 - -
Alju1000119g0015 1783 MobiDBLite consensus disorder prediction 1481 1525 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000119g0015 1180 1341 RAD5 or RAD16-like Gene Family AT5G22750 34.568 5.54e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju1000119g0015 SNF2_N 5.9e-46 CL0023