Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000114g0008 ATGGGTGATTTGAGAGCAGTGGAAGCGAAGGAGAGCGAGAAGGAGAAGGAGAAAACAGGGGACGAGGATGAAAGTGGGACAGAGAGTAAAGGGGTAGAATTGAATGGCCTGATGAGGTGGGAGAAATTCTTACCCAAGATGATGTTGAGGGTTCTCTTGGTTGAAGCTGATGATTCCACCCGCCAGATTATCGCTGCGCTTCTTAGGAAATGCAGTTACAGAGTGGCTGCTGTTCCTGATGGCCTGAAAGCTTGGGAAATACTGAAGGGAAGATCACACAATATCGATCTAATACTGACAGAAGTAGATTTGCCTTCCATATCTGGATATGCTCTTCTGACCTTAATCATGGAGCATGATATTTGCAAAAGCATTCCTGTTATAATGATGTCCTCACAAGATTCAATTAGCACAGTATACAAGTGCATGTTGAAAGGTGCTGCTGACTATCTTGTTAAGCCCATTAGAAAAAATGAGCTAAGGAATTTGTGGCAGCATGTTTGGAGAAGGCGATCGTCAATGATCGGTCTAAATGGTCTTCAAGATGAGAGTGTTGGGCAACAGAGGGTTGAAGCCACTGCTGAAAATAATGCTGCTAGTCCTTCAAGTGGAGATGCCGCATGCATTCAAAAAAATAAGGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCCTGTACAAAGCCTGATTTCGAAGCTGAAAGTGCCCCTATGGAAAATGTTGAGGAATTTTCTCATCTAAGATGTGGTGACTCGTATCCAAGTGATGAAAAGATTCAGGCGGTTGAAGCTAGTATTCGTTTAGGCCACACACCAATTGTGCATGACAATCATGCTGGAGGATCAACTCCGGGTTTCTGCACAAATGGTAAGACAAGCACAACTCATGGCACGGATGGCCGTCCAGAGAATAGGAGTGCAAGTATCAGTGTTGAAGCTCATGATAATCACTATGTTCAGATTAGCTCTTCCAAGGAAGCTATTGACTTGATTGGAGCTTTTCATGCACATTCAAAATGCAGTCCCAAAAGTTCCACAATCAATTGTGCGGGCATGTTTGACTTCTCTCCACAGTTAGATCTTTCCTTAAGAAGAGAACATCCCAGCAGCTTTGAGAATGAAGTCTCCAAAGACAGGCAAACCCTCACGCATTCCAATGCCTCAGCTTTCAAACGGTATACCAGCAGACAATTTCAAGCACCACCAGCAGGTCTCATTAACTTTTGTGATCTAGAAAGAGAACAGAAAACAAATTGTGAGAAAAATAACTCTTATGTTGCTACTGGATGTAACTCAGATAGTTCAACACCGAGTATGCAAAGAAGTATTGTGTCACCCACAACACCCCAATCTAGAGAATCTAAACTCGCATCTTCATTCTCCCAGCAGCCGCATTCTCTCCCGATTCCAGTAAAAGGAATAAGGTTCAATGACCTGTGTAGAACCTATGGTTCTGTCCCTCCTCCAATGTTTGGTACACAGTCTGATCCACCATCAATGCCAAGTCCAAGATCTGCTGTGCACCTAGAATCTACTGTTAAATCGAATGCGTATTATCTGTCTAATGTCAAAGAGAATGGTTCAGAGCAGCTTTATGAAGCTCGAGGTCAAAGTGGAAACAACCTTGGAAGCCACGTTGTTTATGTGCAGGATCACAAGCTGGAACATGTGGAAGATCGAGGACACATTTCCCCTGCAACTGATCAGAGTGGAAGCAGTAGTTTCTGCAATGGAAATTTGAGTCGAATGAACAGCATTGGCTACGGAAGCAACTGTGGAAGTAATAGCAATGTTGATCAGGCTGTCATATTCAGGACTGCTTCAGAGGTGAAGAATTACGAAGACCTCTCAAACATTTCAAATTCTCACCGATCCATCCAAAGAGAAGCAGCTTTAAACAAGTTTCGTTTGAAAAGGAAAGAGAGATGTTATGAGAAGAAGGTTCGTTATGAAAGCAGAAAGAAACTTGCAGAGCAGCGTCCCAGGGTGAAAGGACAATTTGTTCGTCAAGTGCCCCCTGAACCCCAGGCTGCAGATAAAGACAGCTGA 2049 0.4344 MGDLRAVEAKESEKEKEKTGDEDESGTESKGVELNGLMRWEKFLPKMMLRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEILKGRSHNIDLILTEVDLPSISGYALLTLIMEHDICKSIPVIMMSSQDSISTVYKCMLKGAADYLVKPIRKNELRNLWQHVWRRRSSMIGLNGLQDESVGQQRVEATAENNAASPSSGDAACIQKNKELIEKGSDAQSSCTKPDFEAESAPMENVEEFSHLRCGDSYPSDEKIQAVEASIRLGHTPIVHDNHAGGSTPGFCTNGKTSTTHGTDGRPENRSASISVEAHDNHYVQISSSKEAIDLIGAFHAHSKCSPKSSTINCAGMFDFSPQLDLSLRREHPSSFENEVSKDRQTLTHSNASAFKRYTSRQFQAPPAGLINFCDLEREQKTNCEKNNSYVATGCNSDSSTPSMQRSIVSPTTPQSRESKLASSFSQQPHSLPIPVKGIRFNDLCRTYGSVPPPMFGTQSDPPSMPSPRSAVHLESTVKSNAYYLSNVKENGSEQLYEARGQSGNNLGSHVVYVQDHKLEHVEDRGHISPATDQSGSSSFCNGNLSRMNSIGYGSNCGSNSNVDQAVIFRTASEVKNYEDLSNISNSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVPPEPQAADKDS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000114g0008 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 49 225 IPR045279 GO:0009736
Alju1000114g0008 682 MobiDBLite consensus disorder prediction 186 205 - -
Alju1000114g0008 682 MobiDBLite consensus disorder prediction 429 464 - -
Alju1000114g0008 682 SUPERFAMILY CheY-like 42 175 IPR011006 -
Alju1000114g0008 682 MobiDBLite consensus disorder prediction 1 29 - -
Alju1000114g0008 682 Pfam CCT motif 628 670 IPR010402 GO:0005515
Alju1000114g0008 682 MobiDBLite consensus disorder prediction 654 682 - -
Alju1000114g0008 682 CDD psREC_PRR 51 154 - -
Alju1000114g0008 682 SMART REC_2 49 164 IPR001789 GO:0000160
Alju1000114g0008 682 MobiDBLite consensus disorder prediction 1 31 - -
Alju1000114g0008 682 Gene3D - 47 248 - -
Alju1000114g0008 682 ProSiteProfiles CCT domain profile. 628 670 IPR010402 GO:0005515
Alju1000114g0008 682 ProSiteProfiles Response regulatory domain profile. 50 168 IPR001789 GO:0000160
Alju1000114g0008 682 Pfam Response regulator receiver domain 51 162 IPR001789 GO:0000160
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000114g0008 251 671 Response Regulator Gene Family AT5G24470 28.222 4.47e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Alju1000114g0008 Response_reg 1.4e-21 CL0304