Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000085g0003 ATGGTTGAATTTGCCAGCGGTGTCAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTGGGAATTGTTGTCTTTGGTAGTGATACCGCTATCAAAGAAGGGGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCAGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCCTTGGGGGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACTGCTATTGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCCAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTCGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCCTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCCCCATTACTGATGGACAAATCTGTTCGGAAACGGAGCTCTTTTATCGCGGAATTAGACCCGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGCTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACCGAAACAACCACAATATGCACCACTTCCAATTGAAAAAGAAATTTTAGTCATTTATGCAGCTGTCAATGGATTCTGTGATCAAATGCCATTAGACAGAATTTCTCAATATGAGAGAGCCATTCCAAGTAGTATAAAACCGGAATTACTACAATCCCTGAAAGAAGTAGGGCTTTATTGGCCTTCGGCTGCACCTTCTGCTCGAGCTCGCCGTAGGAAACTTTCCGCCGATGCCATTATTAGAGGAGTATCTGGAATAACTACCTTGCTTCGCTTCGCAGAAAGATTTTGTTCTGATCGGGTAATTGCATATGATGATGATTACTGGTTTCGGAACAAGTCTTCAAACCAGATGCCTTCTGCAGCCGGATGTTCTACCAAAGTTTCAGGCGACACATATGCTCAACGGCTTTCTGGAAGTGAAGGGGATGGCGCAAACGAGGGGCTTTTCCACACTGATTTACCACAACCTCTGGTTGTTTTTCCTCCAGACATACAGTCTTCTGACTCTTCCTCGGAAATGGCTACGAAATCAAGGGATTGGAGCTCTTTGGCTTCCCCTTTCAATGGTTACGAGTGTGAAATCATTGGTTCTACTCGGCCTAAAGAATTCTTCTCGCGGATACCCATTCTCAAATCTAAGGCGTTCTAG 1782 0.4624 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVIPITDGQICSETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKEILVIYAAVNGFCDQMPLDRISQYERAIPSSIKPELLQSLKEVGLYWPSAAPSARARRRKLSADAIIRGVSGITTLLRFAERFCSDRVIAYDDDYWFRNKSSNQMPSAAGCSTKVSGDTYAQRLSGSEGDGANEGLFHTDLPQPLVVFPPDIQSSDSSSEMATKSRDWSSLASPFNGYECEIIGSTRPKEFFSRIPILKSKAF 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000085g0003 593 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 43 IPR036121 GO:0046034|GO:1902600
Alju1000085g0003 593 ProSitePatterns ATP synthase alpha and beta subunits signature. 313 322 IPR020003 GO:0005524
Alju1000085g0003 593 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 433 IPR005294 GO:0015986|GO:0045261|GO:0046933
Alju1000085g0003 593 Gene3D - 330 439 IPR038376 -
Alju1000085g0003 593 FunFam ATP synthase subunit alpha, mitochondrial 43 329 - -
Alju1000085g0003 593 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 331 431 - -
Alju1000085g0003 593 NCBIfam F0F1 ATP synthase subunit alpha 1 432 IPR005294 GO:0015986|GO:0045261|GO:0046933
Alju1000085g0003 593 FunFam ATP synthase subunit alpha 330 440 - -
Alju1000085g0003 593 Gene3D - 44 329 IPR027417 -
Alju1000085g0003 593 CDD F1-ATPase_alpha_CD 43 325 IPR033732 GO:0032559
Alju1000085g0003 593 Gene3D - 1 43 IPR023366 -
Alju1000085g0003 593 Pfam ATP synthase alpha/beta chain, C terminal domain 329 426 IPR000793 GO:0015986
Alju1000085g0003 593 CDD ATP-synt_F1_alpha_N 1 41 - -
Alju1000085g0003 593 CDD ATP-synt_F1_alpha_C 333 432 IPR000793 GO:0015986
Alju1000085g0003 593 Pfam ATP synthase alpha/beta family, beta-barrel domain 2 41 IPR004100 GO:0046034|GO:1902600
Alju1000085g0003 593 Hamap ATP synthase subunit alpha [atpA]. 1 474 IPR005294 GO:0015986|GO:0045261|GO:0046933
Alju1000085g0003 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 328 IPR027417 -
Alju1000085g0003 593 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 98 322 IPR000194 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000085g0003 9 328 Primary Pumps ATPases(2) AT4G38510 26.444 5.74e-24 103