Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000082g0002 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAGATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGCAACAATCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATCTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAAAAATATAGTAAGAATTTGATTCTTCGTCGCCGTAGTAAATAG 795 0.4289 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAATIGQVGNVGVNQKSLGRAGSKSWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRTRKRKKYSKNLILRRRSK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000082g0002 264 FunFam 50S ribosomal protein L2 184 264 - -
Alju1000082g0002 264 Gene3D - 1 112 IPR012340 -
Alju1000082g0002 264 MobiDBLite consensus disorder prediction 244 264 - -
Alju1000082g0002 264 SMART Ribosomal_L2_C_2 153 241 IPR022669 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0002 264 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Alju1000082g0002 264 ProSitePatterns Ribosomal protein L2 signature. 206 217 IPR022671 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0002 264 PANTHER RIBOSOMAL PROTEIN L2 36 179 IPR002171 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0002 264 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0002 264 MobiDBLite consensus disorder prediction 213 264 - -
Alju1000082g0002 264 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0002 264 SUPERFAMILY Nucleic acid-binding proteins 2 120 IPR012340 -
Alju1000082g0002 264 Gene3D Ribosomal protein L2, domain 3 184 263 IPR014726 -
Alju1000082g0002 264 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 176 264 IPR002171 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0002 264 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 13 179 IPR002171 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0002 264 MobiDBLite consensus disorder prediction 1 25 - -
Alju1000082g0002 264 SUPERFAMILY Translation proteins SH3-like domain 153 261 IPR008991 -
Alju1000082g0002 264 Pfam Ribosomal Proteins L2, C-terminal domain 177 239 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000082g0002 51 223 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 27.488 3.86e-09 54.3