Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000082g0001 ATGTGTATTCGAATCATAGGAACTAGTAATCGACGATATGCCTATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCGGTACCAAATACACCGTTAGAAAAATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAACGGTATGATAATACAATATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATCGCTCGAGAATTGAGACAGTTAAATTTCACTAAAATAAATTTTAGGAGGGATGGGGATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAGGCTCGATTAGAAAGAATCGGCGGAGAAATCTTATGTTATATATGGTAATCTTTCTGATATCCGAATTCTATGAGAAACTTACATACATTTTTGTGAAAAAGAAAAAAGAGAGAGAAAAAGCGGATGTACGGGGTCAGGTGATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACAAGAAGGGGGACACCTTTTGCCGCTCAAACCGCAGCAGTAAATGCTATTCGGACAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCAGGATAAAAGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAGTTTCATACGGGATGTAACTCCTATGCCACATAATGGATGTAGGCCCCCTAAAAAAAGACAGAAAGTAAAAGCATCCACTCGGACACTGCAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTAGGAAAGGTCAAGCCGACACAATAGGCATTGCGATGCGAAGAGCTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGCGGGTATTCAAGAATCTGTACATGAAATTTTAATGAATTTGAAAAAAATTGTATTGAGAAGTAATCTCTATGGAACTCGGGACGCGTCTATTTGGGTCAAGGGTCCTGGATATGTAACTGCTCAAGACATAATTTTACCACCTTCTGTGGAAATCGTTGACAATACACAACATATAGCTAACCTAACGGAACCTATCAACTTGTGTATTGGATTAAAAATCGAGAGGAATCGCGGATATCGTATAAAAACACTAAATACCTTTCAAGACGGAAGTTATCCTATAGATGCTGTATTCATGCCTGTCCAAAATGGAATAGATGTATCTAGGGATTAG 1305 0.3946 MCIRIIGTSNRRYAYIGDVIVAVIKKAVPNTPLEKSEVIRAVIVRTCKELKRNNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKINFRRDGDCNSFYFSRYNDRSRGSIRKNRRRNLMLYMVIFLISEFYEKLTYIFVKKKKEREKADVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAVNAIRTVADQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRQKVKASTRTLQWKCVESRADSKRLYYGRFILSPLRKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIAGIQESVHEILMNLKKIVLRSNLYGTRDASIWVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIGLKIERNRGYRIKTLNTFQDGSYPIDAVFMPVQNGIDVSRD 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000082g0001 434 Pfam Ribosomal protein S11 157 249 IPR001971 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 SUPERFAMILY Translational machinery components 158 249 - -
Alju1000082g0001 434 Gene3D Ribosomal protein S11 120 250 IPR036967 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 Hamap 50S ribosomal protein L14 [rplN]. 2 107 IPR000218 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 Pfam Ribosomal protein L14p/L23e 1 95 IPR000218 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 Gene3D - 305 422 IPR036643 -
Alju1000082g0001 434 ProSitePatterns Ribosomal protein S11 signature. 219 241 IPR018102 -
Alju1000082g0001 434 ProSitePatterns Ribosomal protein L14 signature. 41 67 IPR019972 -
Alju1000082g0001 434 Pfam RNA polymerase Rpb3/RpoA insert domain 312 404 IPR011262 GO:0003899|GO:0006351|GO:0046983
Alju1000082g0001 434 NCBIfam 50S ribosomal protein L14 1 95 IPR005745 GO:0003735|GO:0006412|GO:0015934
Alju1000082g0001 434 SMART rpoldneu2 275 433 IPR011263 GO:0003899|GO:0006351
Alju1000082g0001 434 Gene3D Ribosomal protein L14 1 98 IPR036853 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 SUPERFAMILY RBP11-like subunits of RNA polymerase 259 305 IPR036603 GO:0006351|GO:0046983
Alju1000082g0001 434 FunFam DNA-directed RNA polymerase subunit alpha 305 422 - -
Alju1000082g0001 434 SUPERFAMILY Ribosomal protein L14 1 96 IPR036853 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 95 IPR000218 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 SMART Ribosomal_L14_2 1 97 IPR000218 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 Hamap 30S ribosomal protein S11 [rpsK]. 114 251 IPR001971 GO:0003735|GO:0005840|GO:0006412
Alju1000082g0001 434 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 305 423 IPR036643 -
Alju1000082g0001 434 FunFam Ribosomal protein L14 31 99 - -
Alju1000082g0001 434 CDD RNAP_alpha_NTD 266 427 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000082g0001 14 90 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.364 4.09e-10 56.2