Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000051g0016 ATGAGCCTGCTCTGTGTAGTTGGATTTGACCTAAAGTTGGGGCATCTACTCTTGGCTCTGTGTTTCTGGATTATATCGGTCATATACTTGAACTGGTTCAACAACGGAGGAATTATGGAAACCAAGGTCGGTTTTCTTGGTGGTGGTGGCAAGATGTGGCTCAAGTGGTGGGAGAAGATCTCAGGCAATAGTTGTAAAATTCATCAACACTACTACCATTTTATTGGATCCAGGAAAGTTCAGAGAACTCTGTGGAGAAAGCTTTTGCTGGCATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTCTTCTCCATGACCTTTCAAGCCACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGACGAAAGGGCTAGGATGCTTCAGGATCAGTTCAATGTTAGTATGAACCGTATCCAAGCCATGTCAATTCTCATCTCAACCTTCAACCATGCCAGGTCCCCTTCTGCCATCGATCAGAGTACATTTGCTTGGTACACCGAACAAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAGTTAGAGAAGCAACAAGGCTGGACCATTAAGAGGATGGATACCCTCGAGCAGAACCCCATTCATGAGGATGACTATGCCCCTGAAGCATTGGAGCCATCCCCAGTTAGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCTGGAAAGGAAGATCGTGAAAATGTTCTGCGTGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATCATCTGGGACTTATCCTCACTTTTGCAGTGTACAACACAGGTCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATATCGAGTTATTGGTTGAACAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCTATGTATGGTTCAAATGTATCAGATGATGGATTCTATCATGTTAGCTCCCTGAACTTTGGAGATCCTTTCCGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTAGATCAATTGGCATCCTTGTTATTGCGCTTCTTGTGGGGCATATTTTTCATGCTACTGTGAATCGAATTGCTGAAGTGGAGGATGATTACCATGAGATGATGGAACATAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGGTTTTGGACCAAGCAAAGATTGAAGCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATCCGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTAAAGAGAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACGGACAAAGGGCACATATTTGTCACTGTCCATCTTATTGAGGAAGTTGTCAATTCAATTGAAGTTGCAACATCAAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTAAAAGCTGGAAAGGATTCAGTTTTCTCAGTCAAGATGGACCTCTGGGTTCTTTCTCATCTTCCTCCCCTGATCCCATTACTCTTATTGTTTCTGTAGAAGATACAGGTGAAGGAATTCCTGAAGAAGCCCAACCACGCATCTTCACTCCATTCATGCAGGTTGGTCCATCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGCGAAATTGGATTTGAGAGCACACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTTACCAATGAATCCCCTGGTTCAACTGAGGGGAAAACCCAGCAAATTAACAACCAACCTAACCTTTCATCCTCGGAATTTCAGGGCATGATTGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTGAACGGCTTGGCATTTGTGTTGAAATAGCTTCAGATTTAAATCAAGGTCTGTCTGTCGTAAGCAATGGGGTAAGAAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAAAGATTCTGGTGTTTCATCTCAGTTTATCAATAACATGAGGAAAATTAATCTCAGGGTTCCTCCAAAGCTGTTCCTTGTTGTTAATTCTTGTAGCTCTTCCAGAGCAAGTTCCATAACATTGGGTGTTCATAATCCAACTGTCATTGTAAAACCTCTGAGAGCAAGCATACTTGCTGCTACACTGCAGAGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGGAATGGGGAGCTTCCAAGTTTGTCTCTCCACCACCTTTTGCGTGGGAGGAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAACAGTTGCGGCTGGATCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGGTGCCATCTCTAAGCTGAAGCCGCCCCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTAGGAGGATTCGGGACATGGAATACTATGTAAACAAAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATATACCCATTTTGGCTATGACTGCAGATGTGATTCAGGCAACGCATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCCGAACAGCTTTATCAGGAAGTTTCACGGTTTTTCCAATCAACTTCATGA 2943 0.4315 MSLLCVVGFDLKLGHLLLALCFWIISVIYLNWFNNGGIMETKVGFLGGGGKMWLKWWEKISGNSCKIHQHYYHFIGSRKVQRTLWRKLLLAWVLGWTMVSLWIFFSMTFQATEKRKETLASMCDERARMLQDQFNVSMNRIQAMSILISTFNHARSPSAIDQSTFAWYTEQTAFERPLTSGVAYAVRVLHSEREQLEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGLILTFAVYNTGLPSNATPNERIQATNGYLGGVFDIELLVEQLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIARSIGILVIALLVGHIFHATVNRIAEVEDDYHEMMEHKKRAEAADVAKSQVLDQAKIEAGKLELEAVLFDIRAVLDDVLSLFSEKSKEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKDTLSGFPVADRCKSWKGFSFLSQDGPLGSFSSSSPDPITLIVSVEDTGEGIPEEAQPRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFESTPKIGSTFTFTAVFTNESPGSTEGKTQQINNQPNLSSSEFQGMIALVIDPRPVRAKVLRYHIERLGICVEIASDLNQGLSVVSNGVRNGDIVINMILVEHEVWDKDSGVSSQFINNMRKINLRVPPKLFLVVNSCSSSRASSITLGVHNPTVIVKPLRASILAATLQRAMGVGNKGNPRNGELPSLSLHHLLRGRKILIVDDNSVNRTVAAGSLKKYGADVVCVNSGKGAISKLKPPHQFDACFMDIQMPEMDGFEATRRIRDMEYYVNKGEVPVETLENTSNWHIPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYQEVSRFFQSTS 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000051g0016 980 Gene3D CHASE domain 160 389 IPR042240 -
Alju1000051g0016 980 CDD REC_hyHK_CKI1_RcsC-like 844 972 - -
Alju1000051g0016 980 Pfam CHASE domain 159 355 IPR006189 -
Alju1000051g0016 980 Gene3D - 837 979 - -
Alju1000051g0016 980 PANTHER TWO-COMPONENT HISTIDINE KINASE 447 971 - -
Alju1000051g0016 980 SMART CHASE_2 156 357 IPR006189 -
Alju1000051g0016 980 SMART REC_2 842 972 IPR001789 GO:0000160
Alju1000051g0016 980 PRINTS Bacterial sensor protein C-terminal signature 588 602 IPR004358 GO:0016310|GO:0016772
Alju1000051g0016 980 PRINTS Bacterial sensor protein C-terminal signature 623 641 IPR004358 GO:0016310|GO:0016772
Alju1000051g0016 980 PRINTS Bacterial sensor protein C-terminal signature 647 660 IPR004358 GO:0016310|GO:0016772
Alju1000051g0016 980 PRINTS Bacterial sensor protein C-terminal signature 606 616 IPR004358 GO:0016310|GO:0016772
Alju1000051g0016 980 FunFam Histidine kinase 4 160 389 - -
Alju1000051g0016 980 ProSiteProfiles Response regulatory domain profile. 843 976 IPR001789 GO:0000160
Alju1000051g0016 980 SUPERFAMILY CheY-like 687 818 IPR011006 -
Alju1000051g0016 980 Gene3D - 455 665 IPR036890 -
Alju1000051g0016 980 Pfam Response regulator receiver domain 844 972 IPR001789 GO:0000160
Alju1000051g0016 980 SMART HKATPase_4 503 663 IPR003594 -
Alju1000051g0016 980 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Alju1000051g0016 980 CDD HATPase_EvgS-ArcB-TorS-like 508 661 - -
Alju1000051g0016 980 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 503 661 IPR003594 -
Alju1000051g0016 980 ProSiteProfiles Response regulatory domain profile. 691 817 IPR001789 GO:0000160
Alju1000051g0016 980 SUPERFAMILY CheY-like 839 976 IPR011006 -
Alju1000051g0016 980 Gene3D - 107 159 - -
Alju1000051g0016 980 CDD PRTases_typeI 796 871 IPR000836 -
Alju1000051g0016 980 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 446 658 IPR036890 -
Alju1000051g0016 980 ProSiteProfiles Histidine kinase domain profile. 445 663 IPR005467 -
Alju1000051g0016 980 Coils Coil 420 440 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000051g0016 1 980 Miscellaneous Gene Families AT1G27320 62.619 0.0 1255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju1000051g0016 CHASE 2e-34 CL0165