Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000051g0013 ATGGAAACCAAGGTCGGTTTTCTTGGTGGTGGTGGCAAGATGTGGCTCAAGTGGTGGGAGAAGATCTCAGGCAATAGTTGTAAAATTCATCAACACTACTACCATTTTATTGGATCCAGGAAAGTTCAGAGAACTCTGTGGAGAAAGCTTTTGCTGGCATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTCTTCTCCATGACCTTTCAAGCCACTGAGAAGAGGAAAGAGACTCTGTCAAGTATGTGTGACGAAAGGGCTAGGATGCTTCAGGATCAGTTCAATGTTAGTATGAACCGTATCCAAGCCATGTCAATTCTCATCTCAACCTTCAACCATGCCAGGTCCCCTTCTGCCATCGATCAGAGTACATTTGCTTGGTACACCGAACAAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAGTTAGAGAAGCAACAAGGCTGGACCATTAAGAGGATGGATACCCTCGAGCAGAACCCCATTCATGAGGATGACTATGCCCCTGAAGCATTGGAGCCATCCCCAGTTAGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCTGGAAAGGAAGATCGTGAAAATGTTCTGCGTGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATCATCTGGGACTTATCCTCACTTTTGCAGTGTACAACACAGGTCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATATCGAGTTATTGGTTGAACAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCTATGTATGGTTCAAATGTATCAGATGATGGATTCTATCATGTTAGCTCCCTGAACTTTGGAGATCCTTTCCGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTAGATCAATTGGCATCCTTGTTATTGCGCTTCTTGTGGGGCATATTTTTCATGCTACTGTGAATCGAATTGCTGAAGTGGAGGATGATTACCATGAGATGATGGAACATAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTTCTTGGAATGTTGCATATACTGATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGTACAGCACAGGGTTGTGGAAAAGCTCTAGTGTCGCTTATAAATGAGGTTTTGGACCAAGCAAAGATTGAAGCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATCCGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTAAAGAGAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACGGACAAAGGGCACATATTTGTCACTGTCCATCTTATTGAGGAAGTTGTCAATTCAATTGAAGTTGCAACATCAAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATAGATGTAAAAGCTGGAAAGGATTCAGTTTTCTCAGTCAAGATGGACCTCTGGGTTCTTTCTCATCTTCCTCCCCTGATCCCATTACTCTTATTGTTTCTGTAGAAGATACAGGTGAAGGAATTCCTGAAGAAGCCCAACCACGCATCTTCACTCCATTCATGCAGGTTGGTCCATCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGCGAAATTGGATTTGAGAGCACACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTTACCAATGAATCCCCTGGTTCAACTGAGGGGAAAACCCAGCAAATTAACAACCAACCTAACCTTTCATCCTCGGAATTTCAGGGCATGATTGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTGAACGGCTTGGCATTTGTGTTGAAATAGCTTCAGATTTAAATCAAGGTCTGTCTGTCGTAAGCAATGGGGTAAGAAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAAAGATTCTGGTGTTTCATCTCAGTTTATCAATAACATGAGGAAAATTAATCTCAGGGTTCCTCCAAAGCTGTTCCTTGTTGTTAATTCTTGTAGCTCTTCCAGAGCAAGTTCCATAACATTGGGTGTTCATAATCCAACTGTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTGCAGAGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGGAATGGGGAGCTTCCAAGTTTGTCTCTCCACCACCTTTTGCGTGGGAGGAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAACAGTTGCGGCTGGATCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGGTGCCATCTCTAAGCTGAAGCCGCCCCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTAGGAGGATTCGAGACATGGAATACCATGTAAACAAAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATATACCCATTTTGGCTATGACTGCAGATGTGATTCAGGCAACGCATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCCGAACAGCTTTATCAGGAAGTTTCACGGTTTTTCCAATCAACTTCATGA 2985 0.4302 METKVGFLGGGGKMWLKWWEKISGNSCKIHQHYYHFIGSRKVQRTLWRKLLLAWVLGWTMVSLWIFFSMTFQATEKRKETLSSMCDERARMLQDQFNVSMNRIQAMSILISTFNHARSPSAIDQSTFAWYTEQTAFERPLTSGVAYAVRVLHSEREQLEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGLILTFAVYNTGLPSNATPNERIQATNGYLGGVFDIELLVEQLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIARSIGILVIALLVGHIFHATVNRIAEVEDDYHEMMEHKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHILMDTDLDVTQKEYVSTAQGCGKALVSLINEVLDQAKIEAGKLELEAVLFDIRAVLDDVLSLFSEKSKEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKDTLSGFPVADRCKSWKGFSFLSQDGPLGSFSSSSPDPITLIVSVEDTGEGIPEEAQPRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFESTPKIGSTFTFTAVFTNESPGSTEGKTQQINNQPNLSSSEFQGMIALVIDPRPVRAKVLRYHIERLGICVEIASDLNQGLSVVSNGVRNGDIVINMILVEHEVWDKDSGVSSQFINNMRKINLRVPPKLFLVVNSCSSSRASSITLGVHNPTVIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLHHLLRGRKILIVDDNSVNRTVAAGSLKKYGADVVCVNSGKGAISKLKPPHQFDACFMDIQMPEMDGFEATRRIRDMEYHVNKGEVPVETLENTSNWHIPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYQEVSRFFQSTS 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000051g0013 994 CDD PRTases_typeI 810 885 IPR000836 -
Alju1000051g0013 994 FunFam Histidine kinase 4 122 351 - -
Alju1000051g0013 994 ProSiteProfiles Response regulatory domain profile. 857 990 IPR001789 GO:0000160
Alju1000051g0013 994 SMART HKATPase_4 517 677 IPR003594 -
Alju1000051g0013 994 SMART HisKA_10 405 470 IPR003661 GO:0000155|GO:0007165
Alju1000051g0013 994 SUPERFAMILY CheY-like 853 990 IPR011006 -
Alju1000051g0013 994 SUPERFAMILY CheY-like 701 832 IPR011006 -
Alju1000051g0013 994 Gene3D - 373 468 - -
Alju1000051g0013 994 Gene3D CHASE domain 122 351 IPR042240 -
Alju1000051g0013 994 ProSiteProfiles Histidine kinase domain profile. 412 677 IPR005467 -
Alju1000051g0013 994 ProSiteProfiles Response regulatory domain profile. 705 831 IPR001789 GO:0000160
Alju1000051g0013 994 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 517 675 IPR003594 -
Alju1000051g0013 994 PANTHER TWO-COMPONENT HISTIDINE KINASE 62 985 - -
Alju1000051g0013 994 FunFam Histidine kinase 4 377 468 - -
Alju1000051g0013 994 Pfam CHASE domain 121 317 IPR006189 -
Alju1000051g0013 994 Pfam His Kinase A (phospho-acceptor) domain 405 470 IPR003661 GO:0000155|GO:0007165
Alju1000051g0013 994 ProSiteProfiles CHASE domain profile. 118 344 IPR006189 -
Alju1000051g0013 994 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Alju1000051g0013 994 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Alju1000051g0013 994 PRINTS Bacterial sensor protein C-terminal signature 620 630 IPR004358 GO:0016310|GO:0016772
Alju1000051g0013 994 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Alju1000051g0013 994 Pfam Response regulator receiver domain 858 986 IPR001789 GO:0000160
Alju1000051g0013 994 CDD HisKA 405 466 IPR003661 GO:0000155|GO:0007165
Alju1000051g0013 994 Gene3D - 851 993 - -
Alju1000051g0013 994 SMART CHASE_2 118 319 IPR006189 -
Alju1000051g0013 994 Coils Coil 382 402 - -
Alju1000051g0013 994 SMART REC_2 856 986 IPR001789 GO:0000160
Alju1000051g0013 994 Gene3D - 69 121 - -
Alju1000051g0013 994 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 459 672 IPR036890 -
Alju1000051g0013 994 CDD REC_hyHK_CKI1_RcsC-like 858 986 - -
Alju1000051g0013 994 Gene3D - 469 679 IPR036890 -
Alju1000051g0013 994 CDD HATPase_EvgS-ArcB-TorS-like 522 675 - -
Alju1000051g0013 994 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 390 471 IPR036097 GO:0000155|GO:0007165
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000051g0013 14 994 Miscellaneous Gene Families AT1G27320 68.927 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju1000051g0013 CHASE 2e-34 CL0165