Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000029g0005 ATGGGAGGAGGGCGTAAGCGCAAGTCTCAAGGAAATCAAGAAGTGAACTCTGTAAAGTGTGCTGTTTGCAAAGAAAGCATGACGAGTTCTGTATTTGCCAGCCACAATGTGGATGTGCACAATATGCTGTCTTGGGTTGAGGGTGGAACTCCTCTGGACTTGGACAATGAAAAACTCGTGCTGAGTACGCTGAACAAAGTCTTAAAAGGGAAAAAGAGGAAAGTTCTCCGCTGTGAGTTGTGTGGAGAAGAAAAGAAAAGTGCTGTAGGGTTTTACACTCACAAGCAAGTTTGTGGTAAAACAGAAGAGGAAAAAGAGCAATTACGTATTACATGTGAAATATGTGGTAAAACAGTCATGCCTGTAAGTTTGCGATCTCATATGTCAATTCATCAACGTAAGAGTGCAGAGGACTGTATTGACTTATCAGAGAGCCCTGCGAGCTTCACAGATGCATCAACTCCAGGTTCAAGTCGAGGAGAATTTGGTACTAGGCGAAATAAGAGAGCTGCTGCAACACGTGGTTGTCCATTTCGAGCTGAAAATATTGATTCGTTACAAAACCATTTGACAATATGCGAGTTCAACCAAAGTCATGTTATGAGGCACCTGTGCAATGTTTGTTTAAATCAGTGTAGGGATGAGTCTGAAATTGTACACCATGTGCAAACTGAGCATGAATCAAAAGATAGTGTTTTAAGTGTTGATGTCAACCCCTATAGTGATAGAGATTCACCATCTGACTTGGAAGAAGAAGGTGCTCGCATCTCCGCGAAACGTCAAAGCAGACAATTTGTGAGGCAGAAATTACCAGGACCTCAACGTGTATGTACATTCTTCACTGGTGGTCCTGTGTGGGCCATGGATTGGTGCCCATTACCAATGAAAGTGTGTTTATCAGAAGACAGTCCTCCATCAGAATACCTGGCTGTTAGTACACACCACAATATGGATGACATGTTTTATGTTCCTAAGTGTTATGAGTTTCCCAATGTTATTCAGTTCTGGAATTGCGGAAACCTTTCATCCCGAAATTTGCACCAGCGTCCCAAGTTGGCTCTAGCTCTAGCACACAACAGTGGTACTGTTTGGAGTTTAGCTTGGTGCCCAAGTGGTGCCTTTGACATAGATGCCAAATTGGTAACCTGGTACCAAGGACGGGGTCACAGCTTCATTGCTGCAGGATATTGCAATGGAATGGTGGCGCTGTGGGATCTTGTTACATTGCCACCTCTTCTGTGGAATGCTCACCAGCATGTACTTAAGCCATTCCAATGCTTTCAAGCCCATTTGACTGTTGTGTCTGCTCTTTCCTTCAACCCTGAATATGATGGTAGATTTTTTATGACTGGGTCACATGACCGTGGTGTCAAGTTTTGGGACATGGAGGATTTATCTGCACCCTTAACACACCATCGCCGAGGCTATGTTACTGATGGTGTTTGGCTTAATCTCTGGATATCAAGCATTACCTCATATGACGATGCTTTTCAACATGAACATACAAATTCTACTTTGCATCCTGTTCGAGACTATGGATACAAACCTTACCCATTGTTAACTCAAAATTCAGTTGCATGGTGCCTGTCCTATAATGACTGGATAAATGCAACAGCTCAAGGTTCAGAGGCAGGTGAAATTGTTGTGACTTTTTCCAGTCAACTAATGAGGGGTTTGGACAATGAAAAAAATGCCATAGATAGACGGATTATGGCAAGTTACACGCTTCTTAAAAAAATTACTGTAGATGAAGATGGGGGGAAAAAACTTGGAGAAGTGGTGTTATGGAAGCCAGAGTGCAAAAAAGCTGCTAAGGGAAAGGCTAAGAAATCAAGCAAAGGGCCTAAAGGTAGGGGACGACAAGCAGTACAGGAGGAAGATAACCAAGGTGAAGTAGCTGCCTCGTTGTACACCCCTGAAGCAATATTAATGGATAGAAATCCTGAATTTTATTCAAGTATTCAGGAAAGATATGGCATCTGTGTTTATGATATAGTTAAGATATCTTGGAATCCAAACATTGGAAGGTTTTTCTGGCTAGCTTCCGGACATCAATGTGGTATCATTCGGATCATTGGCATGCACTTTATGGAAAACAGTGCAACCAACAAGTTCTTACAGAAGGCTTCCAAAATTGTGAACCATAGCTAA 2151 0.424 MGGGRKRKSQGNQEVNSVKCAVCKESMTSSVFASHNVDVHNMLSWVEGGTPLDLDNEKLVLSTLNKVLKGKKRKVLRCELCGEEKKSAVGFYTHKQVCGKTEEEKEQLRITCEICGKTVMPVSLRSHMSIHQRKSAEDCIDLSESPASFTDASTPGSSRGEFGTRRNKRAAATRGCPFRAENIDSLQNHLTICEFNQSHVMRHLCNVCLNQCRDESEIVHHVQTEHESKDSVLSVDVNPYSDRDSPSDLEEEGARISAKRQSRQFVRQKLPGPQRVCTFFTGGPVWAMDWCPLPMKVCLSEDSPPSEYLAVSTHHNMDDMFYVPKCYEFPNVIQFWNCGNLSSRNLHQRPKLALALAHNSGTVWSLAWCPSGAFDIDAKLVTWYQGRGHSFIAAGYCNGMVALWDLVTLPPLLWNAHQHVLKPFQCFQAHLTVVSALSFNPEYDGRFFMTGSHDRGVKFWDMEDLSAPLTHHRRGYVTDGVWLNLWISSITSYDDAFQHEHTNSTLHPVRDYGYKPYPLLTQNSVAWCLSYNDWINATAQGSEAGEIVVTFSSQLMRGLDNEKNAIDRRIMASYTLLKKITVDEDGGKKLGEVVLWKPECKKAAKGKAKKSSKGPKGRGRQAVQEEDNQGEVAASLYTPEAILMDRNPEFYSSIQERYGICVYDIVKISWNPNIGRFFWLASGHQCGIIRIIGMHFMENSATNKFLQKASKIVNHS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000029g0005 716 Pfam WD domain, G-beta repeat 357 405 IPR001680 GO:0005515
Alju1000029g0005 716 Pfam WD domain, G-beta repeat 423 461 IPR001680 GO:0005515
Alju1000029g0005 716 SMART c2h2final6 76 96 IPR013087 -
Alju1000029g0005 716 SMART c2h2final6 203 226 IPR013087 -
Alju1000029g0005 716 SMART c2h2final6 110 131 IPR013087 -
Alju1000029g0005 716 SMART c2h2final6 18 40 IPR013087 -
Alju1000029g0005 716 MobiDBLite consensus disorder prediction 146 168 - -
Alju1000029g0005 716 SUPERFAMILY WD40 repeat-like 272 464 IPR036322 GO:0005515
Alju1000029g0005 716 MobiDBLite consensus disorder prediction 605 630 - -
Alju1000029g0005 716 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT 381 693 - -
Alju1000029g0005 716 Gene3D - 76 506 IPR015943 GO:0005515
Alju1000029g0005 716 MobiDBLite consensus disorder prediction 146 161 - -
Alju1000029g0005 716 ProSitePatterns Zinc finger C2H2 type domain signature. 205 226 IPR013087 -
Alju1000029g0005 716 MobiDBLite consensus disorder prediction 223 256 - -
Alju1000029g0005 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 470 IPR001680 GO:0005515
Alju1000029g0005 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 427 463 - -
Alju1000029g0005 716 SMART WD40_4 349 405 IPR001680 GO:0005515
Alju1000029g0005 716 SMART WD40_4 420 461 IPR001680 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju1000029g0005 WD40 0.21 CL0186