Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2486 ATGCCTCCGACCCTCCGATTCCTCAATTCTCTCGACCGCCCCGCTCCCCCGCCCGAGGCCGTCGCCGTCGAATCCGACTTCGTCGTTATTCTCGCCGCCCTCCTCTGCGCCCTCATATGCGTCGTCGGCCTCATCGCCGTCGCCCGCTGCGCCTGGCTCCGCCGAGGATCCGGCGCCTCCTCCTCCCCCGCCCGGGCTCTGGCCAACAAGGGTCTCAAGAAGAAAGTTCTGCAGTCGCTCCCGAGATTCACCTACGTGAACGGCAGTCCAAATAAGTGGGTAGTGACGTCGGAGTGCGCGATTTGCCTGGGGGAGTTCGCCGACGGCGACGAGATCCGGGTCCTTCCTCAGTGCCGGCACGGCTTTCACATGGCCTGCATCGACACGTGGCTGGGGTCCCACTCTTCGTGCCCCTCTTGTCGGCAGATTCTGGCGGTGGCCAGGTGCCAGAGGTGCGGGCAGTACCCGGCGGGATCGGCCGGAGCCGCCAGCAGCTCCGCCGGTGAACCTGAGCTGAAGTCTAGAGAGGACGGCAATGCCGCTGCTAATAATAACATAAGCAGCGGGTTTAATAATTTCTTGCCTTGA 588 0.6361 MPPTLRFLNSLDRPAPPPEAVAVESDFVVILAALLCALICVVGLIAVARCAWLRRGSGASSSPARALANKGLKKKVLQSLPRFTYVNGSPNKWVVTSECAICLGEFADGDEIRVLPQCRHGFHMACIDTWLGSHSSCPSCRQILAVARCQRCGQYPAGSAGAASSSAGEPELKSREDGNAAANNNISSGFNNFLP 195
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2486 195 CDD RING-H2_EL5-like 98 141 - -
Alju09g2486 195 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 153 - -
Alju09g2486 195 MobiDBLite consensus disorder prediction 178 195 - -
Alju09g2486 195 FunFam E3 ubiquitin-protein ligase ATL6 60 147 - -
Alju09g2486 195 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Alju09g2486 195 SMART ring_2 99 140 IPR001841 -
Alju09g2486 195 MobiDBLite consensus disorder prediction 159 195 - -
Alju09g2486 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
Alju09g2486 195 Pfam Ring finger domain 98 141 IPR001841 -
Alju09g2486 195 SUPERFAMILY RING/U-box 79 146 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Alju09g2486 Alju-ChrAlju09 47685635 47686222 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2486 5 152 C3H Transcription Factor Family AT1G20823 62.500 2.74e-60 185
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2486 09 47685635 47686222 Alju12g1739 12 38547142 38547798 CCT
Alju09g2486 09 47685635 47686222 Alju09g2486 09 47685635 47686222 ECH