Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2463 ATGGTGGTTGTTTTAAGGACTGGTTTGCTGACCACTCTTCTAGTCTTCCAGAACACCATTAAAGAAGAGCTGATCAGGAGCGTGCATGTATACCGACTGAGGGATGGGAGGGAAAGCGAGGTTGAAAGAGAGTTTGTATTTTCTCGGAGTGGCTCATACGGAGAAATGCGGGCTACCCCAATTCTTAGATTACAGAAATTTCGTGTTTCCAAAGTTTCTGAAGGGTATCAGAATGGAGTCTGGCTTTGTGTCTTTGCGTTTCACGCCGATCACAAGCCTCAGTGTTCCCGCGTTCCTTGGTTGTTATCAGTCACGAGGAATCCCAAGCTTCAGATGATCCCAACATTGCTTGATGATCTCTGTATGATACATGAGCTGAACTGTAAATCAAAAGAGAATGATATGCTGCAACTCTCTCCTGATGAAAGATGCCATGGAAACAGCAATGATAGCTATCAGCAAAGAAAAATTTTGCTCCAGGATCTCAATTGTCTTCCTTATCCAGATGACATGCCTGAGTTACTAGACAAGGAAGTAGATGAAGAAAGTTTAGGCATATCTGAGTTACCAGAAGAATCAGATGAGGAAAGTTTAGACACAGCTGAGTTACCAGACAATGACATCATTGACAAAAGTTTTCCAGGTAACGTAGAGAAGAAAAGGAGAGCAGCCAGTAAAGATGTAGCAAGCATTAGTTTAGCAGATCTGGTGAAATACTTTGATGTGCCAATTGTAGAAGCATCAAGAAATCTAAAAGTTGGACTTACTGTACTAAAGAGGAAGTGCAGAGAATTTGGTATCCCCCGCTGGCCTCATAGGAAGATTAAATCGCTTGACAATCTCATTCATGGTCTTCAGGAAGTGGCAGAAAATGAAGAAATGGAGAATGATGCTGCTGTTATGGCTGTGACCAAGAGGCAAAAGATGCTCGAGTGTGAAAAAGAAATAATTGAGAGGAAACCCTCCATGGACATACAAAGAGAAACCAAGAGATTCAGGCAGGATGTCTTCAAGAGAAGGCACAGGGCTAGAGCTATGACAAAACAGAGCTCCAGTGCCTGCAGCTCTTAG 1071 0.4276 MVVVLRTGLLTTLLVFQNTIKEELIRSVHVYRLRDGRESEVEREFVFSRSGSYGEMRATPILRLQKFRVSKVSEGYQNGVWLCVFAFHADHKPQCSRVPWLLSVTRNPKLQMIPTLLDDLCMIHELNCKSKENDMLQLSPDERCHGNSNDSYQQRKILLQDLNCLPYPDDMPELLDKEVDEESLGISELPEESDEESLDTAELPDNDIIDKSFPGNVEKKRRAASKDVASISLADLVKYFDVPIVEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSLDNLIHGLQEVAENEEMENDAAVMAVTKRQKMLECEKEIIERKPSMDIQRETKRFRQDVFKRRHRARAMTKQSSSACSS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2463 356 Coils Coil 275 295 - -
Alju09g2463 356 MobiDBLite consensus disorder prediction 182 212 - -
Alju09g2463 356 PANTHER PROTEIN RKD4 191 351 IPR044607 GO:0003700
Alju09g2463 356 Pfam RWP-RK domain 231 278 IPR003035 -
Alju09g2463 356 MobiDBLite consensus disorder prediction 185 203 - -
Alju09g2463 356 ProSiteProfiles RWP-RK domain profile. 213 298 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2463 Alju-ChrAlju09 47508153 47515182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2463 20 356 AtRKD Transcription Factor Family AT4G35590 46.450 2.75e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Alju09g2463 RWP-RK 1.9e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2463 09 47508153 47515182 Alju09g2463 09 47508153 47515182 ECH