Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2458 ATGGGAGGTGACAGTGCCGTTGATGATGCCACCGCCACCCAGTCCAAGGGCGGTGACGGAGTGAATATCAACGTTCGATGCTCCAATGGTTCGAAATTCTCGGTTCAGATTAGCCTCGAATCAACCGTCGGATTGTTCAAGGAGCTTGTCGCTCGGAATTGTGATATCCCCGCCGATCAACAGCGGCTGATTTACAAGGGTCGGATCTTAAAGGACGATCAAATTCTGCAAAGCTACGGTTTGGAGGCAGATCATACTGTCCATTTGGTCCGTGGCTTTGCCCCAGCTGCTGCAGCCAATTCAGCTGGTGGTACCAATACCAGTGCCACAAATGCCACAACAAATAATGCAAGAGGTGCGGCTAATGAAGGTGGGGGTGGGGGTCTTGGAGGCTCTGGTTTTGGAGATTCACTGTTTCCTGGACTAGGCATCAATGGGCTTGGGGGAAGTGGCATCAATGGCTTGTTTGGAGCAGGCCTTCTGGATCCTGAACAAATGCAGCAATCATTTATGTCTAATCCCAATATGATGAGAGAAATGATGAACACACCTGCTATACAGAATCTACTTAATAATCCTGAGATAATGCGGAGTTTTATTATGAGCAATCCACAATTACGGGAGCTTATGGACCGAAATCCTGAGCTAGCACACATACTTAATGATCCAGCCACTCTCCGTCAAACACTTGAAGCTACGAGAAACCCTGAGATTATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAGCCATTCTTAGATGCCACAACAATGGCTGGTAACCCAGGAAATGACAACTCTAACCCATTTGCTGCCCTTTTGGGCACTCAAGGTGGACAAGCCAGGGATCGATCTGCTAATCCTTCAACTACCAGTGCTGAAGCAACTGCTGGCTCTCCCTCCCCAAATACTAACCCACTTCCTAATCCTTGGTCCTCTACTGGATCTGGAGGTGCTCAAAATAACACTGCAAGGACAACTACTGGTGGGGACACTAGGCAGCAGGCACCCACTGGCTTAGGAGGATTTGGTTTGCAGGATTATCAAGGTCTGGTGGGTGCTATGCCTGATCCTGCCTCATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGCATCCTTTCCAATCCACAGGCTATGAACCAGATACTTGGTGTCAATCCTGATCAACGTGGCTTACCAGATCTAAATTCTCATCTTAGAGAAATGATGCAAAATCCTGAGTTCCTCCGCATGTTGTCTTCACCCGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTCTTTCGCAGCTTGGTCGGTCACCGTCAACACAGGAATCGGGTCAGACTGGGGGAGGCACTGGAACAATGAATAACTCGGGTTTGGAGATGTTGATGAACATGTTTGGTGGACTTGGGACTGGTAGCCTTGCTGTTCCGAACAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAGTTGTCACAGCTTCAAGAGATGGGCTTCTTTGATACGCAAGAGAACATTCGAGCCCTCATCGCCACTCAAGGGAATGTTCACGCAGCAGTTGAACGGCTTCTGGGCAACTCTGGCCATTAG 1665 0.4805 MGGDSAVDDATATQSKGGDGVNINVRCSNGSKFSVQISLESTVGLFKELVARNCDIPADQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAANSAGGTNTSATNATTNNARGAANEGGGGGLGGSGFGDSLFPGLGINGLGGSGINGLFGAGLLDPEQMQQSFMSNPNMMREMMNTPAIQNLLNNPEIMRSFIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNPGNDNSNPFAALLGTQGGQARDRSANPSTTSAEATAGSPSPNTNPLPNPWSSTGSGGAQNNTARTTTGGDTRQQAPTGLGGFGLQDYQGLVGAMPDPASLTQLMQNPAISQMMQSILSNPQAMNQILGVNPDQRGLPDLNSHLREMMQNPEFLRMLSSPETMQQLLSFQQALLSQLGRSPSTQESGQTGGGTGTMNNSGLEMLMNMFGGLGTGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2458 554 FunFam Ubiquitin domain-containing protein DSK2b 18 105 - -
Alju09g2458 554 SUPERFAMILY UBA-like 508 550 IPR009060 GO:0005515
Alju09g2458 554 PANTHER UBIQUILIN 16 549 IPR015496 -
Alju09g2458 554 SMART ubq_7 21 92 IPR000626 GO:0005515
Alju09g2458 554 Gene3D - 198 256 - -
Alju09g2458 554 FunFam Ubiquitin domain-containing protein DSK2b 495 553 - -
Alju09g2458 554 MobiDBLite consensus disorder prediction 459 482 - -
Alju09g2458 554 MobiDBLite consensus disorder prediction 100 120 - -
Alju09g2458 554 SUPERFAMILY Ubiquitin-like 12 108 IPR029071 -
Alju09g2458 554 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 506 551 IPR015940 -
Alju09g2458 554 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Alju09g2458 554 MobiDBLite consensus disorder prediction 100 124 - -
Alju09g2458 554 MobiDBLite consensus disorder prediction 1 21 - -
Alju09g2458 554 CDD UBA_PLICs 512 550 - -
Alju09g2458 554 Pfam UBA/TS-N domain 512 548 IPR015940 -
Alju09g2458 554 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Alju09g2458 554 MobiDBLite consensus disorder prediction 281 357 - -
Alju09g2458 554 MobiDBLite consensus disorder prediction 277 363 - -
Alju09g2458 554 CDD Ubl_Dsk2p_like 21 93 - -
Alju09g2458 554 Gene3D - 8 104 - -
Alju09g2458 554 SMART uba_6 512 550 IPR015940 -
Alju09g2458 554 FunFam Ubiquitin domain-containing protein DSK2b 200 256 - -
Alju09g2458 554 SMART CBM 153 190 IPR006636 -
Alju09g2458 554 SMART CBM 379 420 IPR006636 -
Alju09g2458 554 SMART CBM 203 242 IPR006636 -
Alju09g2458 554 SMART CBM 422 448 IPR006636 -
Alju09g2458 554 Gene3D - 494 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2458 Alju-ChrAlju09 47471985 47477316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2458 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.16e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2458 09 47471985 47477316 Alju12g1790 12 38978550 38980794 CCT
Alju09g2458 09 47471985 47477316 Alju09g2458 09 47471985 47477316 ECH