Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2400 ATGGAAGCTAAACAAGACATAGAGGAAATTACTTCTGAGAATTCTGTATATTCACCAATGGGAAGCAGATTCAGACTTGTTTTTGACAGATTATGGGCTTTTGCCTCTTCCTGGAAGACAAGCAGCATACCACGTGGACGAAGAATTTTCCAGAGAGATGTCGAAAAAGAAGAATTCCAGTATGCCAGTACTCAATGCCTCTCATCCTACTACAGTGTCTTCGTCGTTCGCCTGGCAATCATGGTCATGTTGGCCATCCTGATTGGGCTGCTCACTATATTAACATGGCATTTCACGAAGAGTTATACGGCAAAATCACTTGATAACTTAGCATATGGGCTTCGTTATGAATTACTGCAACGCCCCATCTTACGGATGTGGAATATTTTGAATTCTACGGCTGAAATTACAAGAACTCAGGTTGAGCTGTCTCAGTATGTAATCAGACGATACAGCAACCCAGCCAATCAAGCAGAACAAGTTGAGCTGTACGAGGCTATGAAGTCTGTAACCTGGGCCCTGTTCTCTAGCCGCAGGGCACTCAATTCAATAACTATCAATTACAGGAACGGCTTTGTTCAGGCATTCCACAGAGATCTTAAGGATAACAACACATTTTACATCTACTCTGATCTTGCAAACTACTCCATAGGTGCCAGTGTTGCCAATGAAATGAAATCACTCTCAACACATCAAGCTTGGAACGATGAAGCCATTCACGGTAACAGATCTGCAACTTGGTACCGCGAACCACTTGACCCTCTTAGTGGTGAGAAGATTGGAAAAGCTAAGAAGATTGCACCAGAAGACTTGATTAATATTGCTGGCATTTCTCAAGTCCCTGACGGGGCAGCTTCATGGCATGTTGCTGTGAGCAAGTTCACAGATTCACCTTTGCTTTCTGCTGCGCTGCCAGTTTGGGACTCTTCTAATAAGAGCATTGTGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTTGGCCAGCTAATGAAAGAACTAGTTGAATTTCATAGCGGTTATATCTATTTGACCTCCCTAGAGGGTTACTTACTTGCCACTTCCACAAATGCTCCACTGCTAACATATTCAAAGCCTCTCAAGCTTAAGATGGCTGTTGATTGTGAAGATGATGTCATACGATTGGGAGCCCAGTGGCTGAAGAGAACCTATGGGAAGGATTTCCCTCCTAGTCATGGGGTTCATGTAGAGAATGTCAAGCTGGGCAATCAGCAATATTACATCGACTCATTCTTTTTAAATTTGAAGAGGCTTCCTCTGGTGGGTGTGATCATTATTCCAAGAAAGTATATTATGGGGAAGGTTGATCAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCGTTGTGTATTCTAGTCATTGGATGTGTTTGTATATTGATTCTGACAAATGGGGTGTCAAAGGAAATGAGACTAAGAGCAGAACTGATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAGTTTCTTGCAAACATGAGTCATGAATTGAGGACACCCATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATATCTGATGATTGTCTAACAAATGAACAATATGCAACAGTTACTCAGATAAGAAAATGTTCAACTGCATTACTCCGTCTTCTTAACAACATATTGGATATCAGCAAGGTGGAATCCGGAAAGTTGGTGTTAGAAAATGCAGAATTTGACTTGGGACGGGAACTTGAAGGCCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAACGTAGAGACTGTTTTGGACCTATCAGATGATATACCAAAGGTAGTTCAGGGTGATTCTGCTAGGGTTGTTCAAATTTTTGCAAATTTGATCAACAATTCAATTAAGTTCACTCCATCTGGTCACATTATTCTTCGAGGATGGTGTGAAAACCCAAATTGTTCCAGTGATAGTCGAAATCTTCCTCCTCATCAGAAGTCCCGAACTCCACAAAAGACCAGAATGAAGCAACAAGAAAACCATGAAAAGAAGGCATCTAAAAAAGACAACCAAATAATTCTTTGGTTTGAAGTAGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACCACTAGATTGCACGGAGGCACCGGTCTTGGACTTTGCATTGTGAGAACCTTGGTCAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAAGGCCCAGGAACCCTGATGCGACTGTACCTACTTCTCAGTACACCCATGGATGCCACAGAACAACATTGTCAAATAGATTATGCGGAGAATGGCTTAGTGGTATTGCTTGCACTACATGGAGACACGGGTCGATCTATCACATCTAAATGGTTACAGAAAAATGGGGTTTGCACTCTAGAGACATCTGAATGGAATGAACTGACTCAAATTCTGAGGGAACTCTTCCATGCAAGTTCAGTCCACCATAATGGCTTTGATGCACATTATGCAGTGAACAAGAGTTGGAAATCCAAATTAATCAACATAGAAGAAATGAGGAACCCAACATTTGTCATTATAGTGGACATAGGGCTACTTGATTTGAGCACAGATATATGGAAGGAACAGCTCAACTTCCTTCACAAGTACTTTGGTAGAGCAAAGTTCGCATGGGTGCTAAATCATGACACCTCTAATACCATAAAGATGGAGCTTCGCAGGAAGGGGCATATATTGATGGTCAACAAGCCCCTCTACAAAACCAAAATGTTTCATGTTCTAGAAGCTGTCATGAAGGAGAGAAATCTTGAGCTGCAAAAGAAAAATATGACTGCTTCAAGAACCTCAACGAAAGAGGGTGATGCACACGAGTTTCTGGAGATTGATTCTACTCATTTTGATGGTGTTAGTTCTGATGGTTCTGACATATCCGAAATGGGTGCTTCTAATAGTTCCAATGGAGAAAAACGAAGCGAAACAATAGTGAAATCCCATCCACCATCACAGTACAACAAAAACAACTGCTTCATTGGATTAACCGATGACTATGCAGAAGATAACATTTCAAGGAAAGAAGGATCCTGTAAGAGTAACCCCAACTGCCGTGACATCCTTGAAGACACGGAACCAAAATCACAAGCATCATCTCCAACAGAAGCTCAAGAAAGAGAATCTGGTTCTGGGAAAACATTAAGTGTCACTTGCTCAAGTAAGACTGTCAATGGAAAGAAATATCTTGAAGGTCTGAGGATATTGCTTGCAGAAGACACTCCAGTACTTCAGAGAGTTGCAACCATAATGTTGGAAAAAATGGGAGCTACAGTTGTTGCAGTAGGTGATGGACAGCAGGCTGTGGATGCTCTCAATTGCATGCTCGGCACTGAAGATAGTAGAAGGGAGTCTCTAATGAAGGAAAGAAGCCCAATATCTCAAACAGAAATTATCAGTTGTGCACCTTATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTACGAAGCGACAAAAGCAATCAGGAAGTCAGAAGCAGGAACTGGCTCGCACATTCCCATTGTTGCTCTTACAGCCCATGCAATGTCATGTGATGAGGCTAAGTGCCTGGAGGTGGGCATGGATGCTTATCTAACCAAGCCAATTGACTTCAAGCTGATGGTGTCAACCATTCTTTCACTCACTAAAACAACTTCCTGA 3711 0.4196 MEAKQDIEEITSENSVYSPMGSRFRLVFDRLWAFASSWKTSSIPRGRRIFQRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKSYTAKSLDNLAYGLRYELLQRPILRMWNILNSTAEITRTQVELSQYVIRRYSNPANQAEQVELYEAMKSVTWALFSSRRALNSITINYRNGFVQAFHRDLKDNNTFYIYSDLANYSIGASVANEMKSLSTHQAWNDEAIHGNRSATWYREPLDPLSGEKIGKAKKIAPEDLINIAGISQVPDGAASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEFHSGYIYLTSLEGYLLATSTNAPLLTYSKPLKLKMAVDCEDDVIRLGAQWLKRTYGKDFPPSHGVHVENVKLGNQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGKVDQRAFKTLVILISASLCILVIGCVCILILTNGVSKEMRLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLENAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDIPKVVQGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPNCSSDSRNLPPHQKSRTPQKTRMKQQENHEKKASKKDNQIILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLLLSTPMDATEQHCQIDYAENGLVVLLALHGDTGRSITSKWLQKNGVCTLETSEWNELTQILRELFHASSVHHNGFDAHYAVNKSWKSKLINIEEMRNPTFVIIVDIGLLDLSTDIWKEQLNFLHKYFGRAKFAWVLNHDTSNTIKMELRRKGHILMVNKPLYKTKMFHVLEAVMKERNLELQKKNMTASRTSTKEGDAHEFLEIDSTHFDGVSSDGSDISEMGASNSSNGEKRSETIVKSHPPSQYNKNNCFIGLTDDYAEDNISRKEGSCKSNPNCRDILEDTEPKSQASSPTEAQERESGSGKTLSVTCSSKTVNGKKYLEGLRILLAEDTPVLQRVATIMLEKMGATVVAVGDGQQAVDALNCMLGTEDSRRESLMKERSPISQTEIISCAPYDLILMDCQMPKMDGYEATKAIRKSEAGTGSHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMVSTILSLTKTTS 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2400 1236 ProSiteProfiles Histidine kinase domain profile. 508 765 IPR005467 -
Alju09g2400 1236 Pfam Response regulator receiver domain 1088 1227 IPR001789 GO:0000160
Alju09g2400 1236 CDD HisKA 502 563 IPR003661 GO:0000155|GO:0007165
Alju09g2400 1236 Gene3D - 1069 1234 - -
Alju09g2400 1236 SMART HisKA_10 501 567 IPR003661 GO:0000155|GO:0007165
Alju09g2400 1236 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 556 761 IPR036890 -
Alju09g2400 1236 MobiDBLite consensus disorder prediction 668 683 - -
Alju09g2400 1236 MobiDBLite consensus disorder prediction 1047 1070 - -
Alju09g2400 1236 ProSiteProfiles Response regulatory domain profile. 1087 1232 IPR001789 GO:0000160
Alju09g2400 1236 Pfam His Kinase A (phospho-acceptor) domain 502 567 IPR003661 GO:0000155|GO:0007165
Alju09g2400 1236 SMART HKATPase_4 614 765 IPR003594 -
Alju09g2400 1236 SMART REC_2 1086 1228 IPR001789 GO:0000160
Alju09g2400 1236 CDD REC_hyHK_CKI1_RcsC-like 1088 1228 - -
Alju09g2400 1236 MobiDBLite consensus disorder prediction 969 1004 - -
Alju09g2400 1236 FunFam Histidine kinase 1-like protein 489 568 - -
Alju09g2400 1236 PRINTS Bacterial sensor protein C-terminal signature 725 743 IPR004358 GO:0016310|GO:0016772
Alju09g2400 1236 PRINTS Bacterial sensor protein C-terminal signature 708 718 IPR004358 GO:0016310|GO:0016772
Alju09g2400 1236 PRINTS Bacterial sensor protein C-terminal signature 690 704 IPR004358 GO:0016310|GO:0016772
Alju09g2400 1236 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 488 568 IPR036097 GO:0000155|GO:0007165
Alju09g2400 1236 Gene3D - 489 568 - -
Alju09g2400 1236 SUPERFAMILY CheY-like 1084 1232 IPR011006 -
Alju09g2400 1236 PANTHER TWO-COMPONENT HISTIDINE KINASE 59 773 - -
Alju09g2400 1236 MobiDBLite consensus disorder prediction 971 1004 - -
Alju09g2400 1236 MobiDBLite consensus disorder prediction 1027 1070 - -
Alju09g2400 1236 Gene3D - 569 766 IPR036890 -
Alju09g2400 1236 MobiDBLite consensus disorder prediction 651 683 - -
Alju09g2400 1236 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 614 763 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2400 Alju-ChrAlju09 46947881 46954315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2400 13 1236 Histidine Kinase Gene Family AT2G17820 64.286 0.0 1573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju09g2400 HATPase_c 3.2e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2400 09 46947881 46954315 Alju09g2400 09 46947881 46954315 ECH