Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2390 ATGGCGGAGGAGAGATCAACTGGTGTGGTTCAGTGGTTCAGCGATTCTAAAGGTTTTGGCTTTATCAAACCCGACGATGGAGGAGAAGATCTCTTCGTTCATCAATCTTCCATCAGATCCGAAGGATATCGTAGTCTTGTAGAAGGCGATCGTGTCGAGTTCGTGATTGCCTCCGGTGACAACGACAGAACTAAAGCCATCGATGTTACCGGTCCCAATGGAACTCCTCTACAAGCCAAAAAAGACAATTACGGTGGTCGCGATGGGGGCTATGGTTATAGCGGTGGATGGAGAGGTGGTGATAGGCGTAATAGCGGAGGAGCTAGCGGTGCTGGCTGCTATCAGTGTGGCGATATCGGCCACTTAGCCAGAGATTGCAATAGGCTCGACAGTGCCAGTGGGCCTTCTTGTTTTAAATGCGGTGAAGTCGGGCACTTGGCTAGGGACTGTTCTCTTGGAAATAATGGCGGCGGCGGGGCTTGCTTTAGGTGTCATGAGTATGGGCACATGGCGAGGGACTGCACCAAGGGAAGCGGTGGGGGCGGTGGGGGTTGCTTCACATGTGGTGAAGTGGGTCACTTGGCCAGGGACTGCAACAAAGACAGCGGAAGGTACGGCGGCGGCGGTAGCGGAGGAAATGCATGCTATAATTGTGGGAGGCGTGGGCATTTTGCGCGAGAGTGCCCTGATGGCTCTGCATGA 702 0.5385 MAEERSTGVVQWFSDSKGFGFIKPDDGGEDLFVHQSSIRSEGYRSLVEGDRVEFVIASGDNDRTKAIDVTGPNGTPLQAKKDNYGGRDGGYGYSGGWRGGDRRNSGGASGAGCYQCGDIGHLARDCNRLDSASGPSCFKCGEVGHLARDCSLGNNGGGGACFRCHEYGHMARDCTKGSGGGGGGCFTCGEVGHLARDCNKDSGRYGGGGSGGNACYNCGRRGHFARECPDGSA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2390 233 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Alju09g2390 233 SUPERFAMILY Retrovirus zinc finger-like domains 105 152 IPR036875 GO:0003676|GO:0008270
Alju09g2390 233 PANTHER COLD SHOCK DOMAIN PROTEIN 2 178 230 - -
Alju09g2390 233 ProSiteProfiles Zinc finger CCHC-type profile. 161 176 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 ProSiteProfiles Zinc finger CCHC-type profile. 185 198 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 SUPERFAMILY Retrovirus zinc finger-like domains 203 230 IPR036875 GO:0003676|GO:0008270
Alju09g2390 233 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Alju09g2390 233 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Alju09g2390 233 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Alju09g2390 233 ProSiteProfiles Zinc finger CCHC-type profile. 215 230 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Alju09g2390 233 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 SMART c2hcfinal6 160 176 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 SMART c2hcfinal6 214 230 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 Gene3D - 183 205 - -
Alju09g2390 233 Gene3D - 132 155 - -
Alju09g2390 233 Gene3D - 206 233 - -
Alju09g2390 233 Gene3D - 156 182 - -
Alju09g2390 233 Gene3D - 91 131 - -
Alju09g2390 233 Gene3D - 1 83 IPR012340 -
Alju09g2390 233 SMART csp_8 7 72 IPR011129 GO:0003676
Alju09g2390 233 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Alju09g2390 233 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Alju09g2390 233 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Alju09g2390 233 Pfam Zinc knuckle 184 199 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 Pfam Zinc knuckle 160 176 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 Pfam Zinc knuckle 214 229 IPR001878 GO:0003676|GO:0008270
Alju09g2390 233 SUPERFAMILY Retrovirus zinc finger-like domains 153 201 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2390 Alju-ChrAlju09 46871326 46872027 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Alju09g2390 CSD 3.4e-24 CL0021