Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2368 ATGCGAACTAGAAACGCAGGTTCTTCCAAGACACCGCCGGCAAAGAAGACACCGCCGACGAGGAAATCCACATCTAAAAGCCCGGCGAACGCACAATCCCCCCAGACCAAGCGCACCTCTACGATCAAAACTAGGCAGGCAAAGAAGAACGAGGCTTCGCCCTTACAAAATACAAGCTTTAATGAGGAACCGGGGCAATCGTCCGAGGAGGCAAAGGCAGCAGCTGATACTTCTCCGGTGACGCCAGAGACAAAAGTTGTTACAGCTGCAAAGTCAACACCAAAGAGGACGCCTAAGAGAGCCGTGGGAAGACCTAGGAATTCAACTAAAGCCGTTACTGCCCGGGGACAAGAAGAACAAGTGGAGGCAATAACTGATGAAACGCCGAAAGTGGATAATATTGAAGTAGCTAAGAAATTGGAGGAGCCTCTAAATGTCGAGGTAGTCAAAGCAGATGAAATTGAGAGTAAAGAAGCGGGGGAACACGGTGTTGAGTTTGTTAGACAATCTGCAGAGAATGAACTACATCCCAAGGAAGGGGACGAGTGTAATGCTGATAGTGCCAGTGAATTAGCAGAAAAGAAAAGAGACATAGTTGAAGCTGCCTCCCAAGGTGTCCCTATTTTGTTGAATCAGGAAGAACCTCGCATGGGGGAGCTCTCTAAATCTCTGGAGAATGAAGAACCCACTGGTGCAAAAGAAGGAGAACAAACAAATGAAGAGGAATGGGAAAAAGAATCAGAAAAATCAATGAAAGAACAGACAACTAATATTGGACATAAAGAGAAATTTAATGCTGATTCTGTCAGTATGGAAATGAAAGACCAAAGAGAGCAAGTGAAGGAGGTGGATGGAGAAAAAGAATCAGACAAATCAATGGAAAAGGAGGGAGAAAACGCATTAGAAAAATCCATGCAAGAGACAAGTAATATTATACATAACCAGGAATCTAATACTGATTCTGTTGAGAAGGAAATGACAAACCAATTTCTGCAAGATGATGTTAAACTTGAAAAGGAGAATCCAAGTGGTGATCAAGGTGCTGAAGGCTGTGGTGAAAGGTTGGATCGTGAAAAACAAAGGGGGGAGGAGTTTGTTGAGGCTGATCCAGAGGAGCCTCTTGAAGAAGCTGAGGCATTGGATGAGGAACGCAAGGAATTGTCCACTATGGTGAAGGAGCGCAAGATTAAGAAAGAGAATGAAATATTTGTTGGTGGGCTTGATCGTGATGCTACAGAGGAGGATCTTAAAAAGGTTTTTGAGAAGATTGGGGAGATAGTTGAAGTTAGGTTGCATAAAAATTCTTCAACAAACAAAAATAAGGGCTATGCATTCGTAAAATTTTCTTGTAAGGAACATGCAAAGAAAGCTTTGTCAGATATGAAAAACCCTGTTATACATGGTAAGCGATGTGGCACTGCACCCAGTGAGGATAATGACACGTTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGATTATGGTGTTGAGGGTGTTGAAAACATTACACTTGTCCCAGATGTTCGCCATGAAGGATTAAGCCGGGGCTTTGCATTCCTTGAGTTTTCCTGCCATCACGATGCGATGCTTGCCTATAAGAGGCTTCAAAAGCCTGATGTAATCTTTGGACATGCTGAGCGAACTGTCAAAGTAGCCTTTGCCGAACCTGTACGAGAGCTGGATCCAGAGATTATGGCGCAGGTGAAGTCTGTTTTTGTTGATGGTCTCCCTCCACATTGGGATGAAGTCTGCATTAGGGAGCACTTCAAAGGTTATGGTGAAATTGTACGAATTGTACTTGCCCAGAATATGACTACTGCTAAGAGGAAAGATTTTGGATTTGTTGATTTCTCTACTCATGAAGCCGCTGTAGCTTGTGTTGATGGTGTGAATAGTTCAGAATTTGTTGATGGAACACAAAAGACTAAGGTGAGAGCCAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGAGGCATGTGTGGTGGGTTCCGGATTGGTCATGCTCGTGGTGGAGCCTTTCCAAGATCTGCTGCAACAGGAAGGGGTTTATATCGTGGGGGACATGCTGCCAACTGGGGAAATTTTAATAGGGATCGGAATTTTAATCTTGGAGGACACGGTCAAATTGGAAGAATGGGTTTCAGGAATGATCTTAATCTTAATAATGCTTATCCAGATTTTCATCAGAGGCAATTCGGTACACAAGGTGCTGCAGTTGCTGGACCATCTAGGCCTTATCTTGATAGAGCATGGTATGGTACCCCTGAGAGAGGCCCTGGTGAACCTATTCCCCCGAGGATGCCATTCTCCCCTGAAGGACAATTGGATAGGCCTTTTATGGGAAGGCATATTGATGATCCTTATCTTTATGAAGACGGTGTGCATGGGATGAAACGACCATTTTATATGACTGACCCAGATCCTAATTACATGGGTCCTGCTAGACTTCGTCCTCGACTGGATTATACAGATCCTGCTGTATTTCCTGGCAGTCGTTACCATGATTCTATTGCAGATGGCAGGAGACAGTACTCACATGATTATCATGGTACTGATTATGGTGAAGAATCTTTTGGTGAGCTGGGAAATGCAGGAGGGGCTTCTCCGTTTATGAGCTCGTGGTTTGCTGCCTGCATATAA 2676 0.4391 MRTRNAGSSKTPPAKKTPPTRKSTSKSPANAQSPQTKRTSTIKTRQAKKNEASPLQNTSFNEEPGQSSEEAKAAADTSPVTPETKVVTAAKSTPKRTPKRAVGRPRNSTKAVTARGQEEQVEAITDETPKVDNIEVAKKLEEPLNVEVVKADEIESKEAGEHGVEFVRQSAENELHPKEGDECNADSASELAEKKRDIVEAASQGVPILLNQEEPRMGELSKSLENEEPTGAKEGEQTNEEEWEKESEKSMKEQTTNIGHKEKFNADSVSMEMKDQREQVKEVDGEKESDKSMEKEGENALEKSMQETSNIIHNQESNTDSVEKEMTNQFLQDDVKLEKENPSGDQGAEGCGERLDREKQRGEEFVEADPEEPLEEAEALDEERKELSTMVKERKIKKENEIFVGGLDRDATEEDLKKVFEKIGEIVEVRLHKNSSTNKNKGYAFVKFSCKEHAKKALSDMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDVRHEGLSRGFAFLEFSCHHDAMLAYKRLQKPDVIFGHAERTVKVAFAEPVRELDPEIMAQVKSVFVDGLPPHWDEVCIREHFKGYGEIVRIVLAQNMTTAKRKDFGFVDFSTHEAAVACVDGVNSSEFVDGTQKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGAFPRSAATGRGLYRGGHAANWGNFNRDRNFNLGGHGQIGRMGFRNDLNLNNAYPDFHQRQFGTQGAAVAGPSRPYLDRAWYGTPERGPGEPIPPRMPFSPEGQLDRPFMGRHIDDPYLYEDGVHGMKRPFYMTDPDPNYMGPARLRPRLDYTDPAVFPGSRYHDSIADGRRQYSHDYHGTDYGEESFGELGNAGGASPFMSSWFAACI 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2368 891 MobiDBLite consensus disorder prediction 1 74 - -
Alju09g2368 891 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 578 660 IPR000504 GO:0003723
Alju09g2368 891 MobiDBLite consensus disorder prediction 170 383 - -
Alju09g2368 891 CDD RRM_SF 482 560 - -
Alju09g2368 891 MobiDBLite consensus disorder prediction 327 343 - -
Alju09g2368 891 FunFam Heterogeneous nuclear ribonucleoprotein Q 480 564 - -
Alju09g2368 891 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 482 550 IPR000504 GO:0003723
Alju09g2368 891 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 402 470 IPR000504 GO:0003723
Alju09g2368 891 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 580 644 IPR000504 GO:0003723
Alju09g2368 891 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 480 565 IPR000504 GO:0003723
Alju09g2368 891 Gene3D - 479 564 IPR012677 -
Alju09g2368 891 MobiDBLite consensus disorder prediction 303 326 - -
Alju09g2368 891 MobiDBLite consensus disorder prediction 1 120 - -
Alju09g2368 891 MobiDBLite consensus disorder prediction 350 367 - -
Alju09g2368 891 SUPERFAMILY RNA-binding domain, RBD 396 472 IPR035979 GO:0003676
Alju09g2368 891 CDD RRM_SF 402 471 - -
Alju09g2368 891 MobiDBLite consensus disorder prediction 170 200 - -
Alju09g2368 891 MobiDBLite consensus disorder prediction 218 302 - -
Alju09g2368 891 FunFam Heterogeneous nuclear ribonucleoprotein Q 565 718 - -
Alju09g2368 891 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 400 478 IPR000504 GO:0003723
Alju09g2368 891 CDD RRM_SF 580 644 - -
Alju09g2368 891 Coils Coil 380 400 - -
Alju09g2368 891 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 229 857 - -
Alju09g2368 891 Gene3D - 567 711 IPR012677 -
Alju09g2368 891 Gene3D - 370 477 IPR012677 -
Alju09g2368 891 SMART rrm1_1 579 654 IPR000504 GO:0003723
Alju09g2368 891 SMART rrm1_1 481 561 IPR000504 GO:0003723
Alju09g2368 891 SMART rrm1_1 401 474 IPR000504 GO:0003723
Alju09g2368 891 SUPERFAMILY RNA-binding domain, RBD 478 648 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2368 Alju-ChrAlju09 46699196 46703966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2368 402 646 Eukaryotic Initiation Factors Gene Family AT2G23350 24.206 3.85e-14 74.7