Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2367 ATGGTATCGTTGGCAATCGTTGCTGTACTCTGTTCCTGCACTCCTTTTCCGACTTTATCTCTCTATTTTTGTGATTCTGCCGCGATGTCGTCCGCCGGAGAAGGTGATCGCACTGCTGTTGATCCGCCCACAGAGGAGCCTAAGCCAGTGACCAAGGAGAAGAAGCCCAAGGTTCCAAAGGAGAAGAAGCCCAAGCAGGCGAAAACAGTTTCTCATCCTCCATATTTTCAGATGATTGAGGAAGCTTTATTGGCTCTGAACGAGAAGGGCGGCTCCAGCCCCTACGCCATAGCCAAGTACATGGAGGAGAAGCACAAGGCGGTTCTTCCTGCGAATTTCAGGAAGATCTTGGCCCTTCAGCTGAAGAACCAGGCTGCTAGAGGGAAGCTCATCAAGATCAAGGCCTCCTACAAGCTATCCTTAGAGGCTGGCAAGAAGGACATGGACACCACCGGCAGGGTAACGAGGTCCACGACACAGAAGGGTCTGCGATCTAAGCGAAGCGCGGCTAAGAAATCAGAGACAGGCAAGAAGGTTAAGAAGGCAGTGATGAAAGTGGTTGGGGTGAAGAAGACGAAGAAATCAGCCACACCTGCGAAGCCGAAGCAGCCCAAGTCTCTGAGAACTCCCTCTAAGAGGGCCAGAAGGGTTACTGCATCAGCTTCATGA 669 0.5187 MVSLAIVAVLCSCTPFPTLSLYFCDSAAMSSAGEGDRTAVDPPTEEPKPVTKEKKPKVPKEKKPKQAKTVSHPPYFQMIEEALLALNEKGGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNQAARGKLIKIKASYKLSLEAGKKDMDTTGRVTRSTTQKGLRSKRSAAKKSETGKKVKKAVMKVVGVKKTKKSATPAKPKQPKSLRTPSKRARRVTASAS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2367 222 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 71 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju09g2367 222 CDD H15 69 146 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju09g2367 222 SMART h15plus2 69 136 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju09g2367 222 MobiDBLite consensus disorder prediction 39 57 - -
Alju09g2367 222 MobiDBLite consensus disorder prediction 149 222 - -
Alju09g2367 222 MobiDBLite consensus disorder prediction 167 181 - -
Alju09g2367 222 Gene3D - 66 150 IPR036388 -
Alju09g2367 222 PANTHER HISTONE H1 45 204 - -
Alju09g2367 222 MobiDBLite consensus disorder prediction 33 71 - -
Alju09g2367 222 PRINTS Histone H5 signature 85 102 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju09g2367 222 PRINTS Histone H5 signature 161 175 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju09g2367 222 PRINTS Histone H5 signature 193 210 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju09g2367 222 PRINTS Histone H5 signature 58 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Alju09g2367 222 SUPERFAMILY "Winged helix" DNA-binding domain 68 143 IPR036390 -
Alju09g2367 222 Pfam linker histone H1 and H5 family 72 138 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2367 Alju-ChrAlju09 46692798 46697227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2367 58 146 Single Myb Histone (SMH) Gene Family AT1G72740 38.202 1.02e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2367 09 46692798 46697227 Alju09g2367 09 46692798 46697227 ECH