Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2360 ATGCGAACGCTTTGCGACGCTTGTGAGCGCGCTGCCGCCATCGTATTCTGCGCCGCCGATGAGGCCGCGCTCTGCCGTGCCTGCGACGAAAAGGTTCACATGTGTAATAAGCTAGCTAGCCGGCATATCAGGGTTGGCCTTGCCAGTCCAAGTGATGTGCCACGCTGTGACATTTGTGAGAATGCACCTGCTTTCTTTTATTGCGAGACAGATGGAACTTCTCTGTGTTTGCAATGTGACATGATAGTTCATGTTGGCGGTAAAAGAACACATGGAAGATATCTTCTTTTCAGGCAGCGGGTTGAATTTCCGGGAGATAAACCTGGTCAAGCAGAAACCCCAGGCTCACAGCCTCTGGACGCTGTTGAGACCAAACGAGGCCAAAATTCATTGCTTAAAATAAAAATGGCAGAGAAACAACAAAATCATAGGATGCCAACTCCAGAACATGATGCTGATGGCCATGCCAAGATGGATGCTAAAATGATTGATCTGAACATGAAGCCTCAGAGAATACATGACCACGGGTCAAATAATCAGCCATAA 546 0.4799 MRTLCDACERAAAIVFCAADEAALCRACDEKVHMCNKLASRHIRVGLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPGQAETPGSQPLDAVETKRGQNSLLKIKMAEKQQNHRMPTPEHDADGHAKMDAKMIDLNMKPQRIHDHGSNNQP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2360 181 MobiDBLite consensus disorder prediction 138 158 - -
Alju09g2360 181 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Alju09g2360 181 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Alju09g2360 181 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Alju09g2360 181 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Alju09g2360 181 FunFam B-box zinc finger protein 19 2 92 - -
Alju09g2360 181 Gene3D Classic Zinc Finger 2 91 - -
Alju09g2360 181 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 147 - -
Alju09g2360 181 CDD Bbox1_BBX-like 4 47 - -
Alju09g2360 181 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Alju09g2360 181 SMART bboxneu5 51 96 IPR000315 GO:0008270
Alju09g2360 181 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2360 Alju-ChrAlju09 46620338 46622437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2360 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 62.222 6.13e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Alju09g2360 zf-B_box 1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2360 09 46620338 46622437 Alju12g0014 12 276967 278926 CCT
Alju12g0014 12 276967 278926 Alju09g2360 09 46620338 46622437 ECH
Alju09g2360 09 46620338 46622437 Alju09g2360 09 46620338 46622437 ECH