Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2358 ATGGATAAGCCTCACTACCTCCTGCAGGCTTCCCCCATGGACAAGCCCTCTCTCCCCGATGCTCAAAGACCGACCTTTGACCGTTCTGACCACACCCTCCACTTGATGACCGTCGATCCCCGCCGGACTGCTGGGGATGCCCAGGATTCCCAGCTCCTCCCCGCTCCCGCCCGCGATGCTGATGCGGCTGTCATGCACCCTGGCTGCTTGTCCAACATGGAACTCACGGCTGATGTGAAGGTCGCGGACGGCAGCTCCGGGAAAAGAAAGCGGGGTCGCCCGGCCAGGGGTACTGCGAGGGAACCGCCATTGAAGAAGATTAGGGACGAAGAGGATGTCTGTTTCATTTGTTTCGATGGTGGGAGCCTTGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCATACCATCCCGCATGTATTAAGCGAGACGAGGCATTCTTCCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCATTTGTCAGAAGGCATCCCATTATATGTGCTATACGTGTACATATTCTTTGTGCAAGGGTTGTATAAAGGGCGCCGATTATCTCTGTGTCAGAGGGAATAAAGGTCTGTGTGGGATATGCATGAGGACTATAATGCTCATTGAGAACAGTGCTCAGGGAAACAAGGAAATGTGTGAAGTAGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTCTATTGGTTGTACTTGAAAGAGAAGCTATCTTTAACATTAGATGAGATCCTTCGAGCCAAAGACCCATGGAAAGGAGGTGCTACCAATGGTTTGAAGTTAGAAAGGCCTCATGAAATTCATATCCATAAAGATGACAAGGGTTCCGGGTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAAAATAACCATTCAAATAGACAGCCAAAGCTTCTTAATAAGGAGGAATGCCCAAATGTGAACACTTCAGCTGGTGACAAAGATGCATCTATGGCTGAACGCACAAAATGGGCATCAAAGGAGCTTTTAGAGTTTGTTTCACATATGAAAAATGGTGATACATCTCTCCTATCTCAACACGATGTAGAGGCCCTTTTGCTGGAGTATATAAAGAAAAACAATCTTTGTGATCCTCAACAGAATAGCCAAGTTATTTGTGATTCAAGGCTAGTCAATTTGTTCAGAAAGGAGCGCATGGGTCACTCTGAAATGTTGAAGCTTCTTGAATCTCATTTTCTTATAAAAGATTATGCCTCTGACAATATTTTTAGGTCAGGACCTATTGATAATGTTGCTAGTCAGATGGAGGTTAATGACAGTGGTAATAATCAGCCAATTGTGGCTAATGATAAGAGAAATAAAACACATAAAAGGGCCGAAATGCTGCTTCATGATCCAGATGCATGTGCCGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGTAATCAGATCGAGAATCTAGTTGAAGATGCTGAGAACTTTAAAGACAAGGTTGTTGGTTCAATTGTGCGGATAAGAATCTCCAGCAGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTTATAGGTACCAGCAATATTGCTGAATCTTACAATATTGGCTCAAAAACAACGGGCATTGTGCTTGAAATTTCTAATTTAAACAAGAAAGAGGTCATAAAAATAAGTGAGATTTCAGATCAGGCTTTCTCTGAGGAGGAATGCAAACGGTTGCGCCAGAGCATAAAATATGGGTTTTCAAGAAGATTAACTGTGGGACAGATTATGGAGAAGGCATTGATACTTCAGGCAGTGAGAGTTAATGATTTGCTGGAAGGCGAGATGCTTCAGCTTAACCATCTTCGTGATAGAGCAAGTGAAAAGGGACATAGAAAAGAATATCCTTTACTATCTATAACTTTGTTTTTCCTTTTAAAACTAGACTGTGGGTAA 1935 0.4326 MDKPHYLLQASPMDKPSLPDAQRPTFDRSDHTLHLMTVDPRRTAGDAQDSQLLPAPARDADAAVMHPGCLSNMELTADVKVADGSSGKRKRGRPARGTAREPPLKKIRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSICQKASHYMCYTCTYSLCKGCIKGADYLCVRGNKGLCGICMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDEILRAKDPWKGGATNGLKLERPHEIHIHKDDKGSGSENSCIDIESNNLENNHSNRQPKLLNKEECPNVNTSAGDKDASMAERTKWASKELLEFVSHMKNGDTSLLSQHDVEALLLEYIKKNNLCDPQQNSQVICDSRLVNLFRKERMGHSEMLKLLESHFLIKDYASDNIFRSGPIDNVASQMEVNDSGNNQPIVANDKRNKTHKRAEMLLHDPDACAAINAHNINLIYLRRNQIENLVEDAENFKDKVVGSIVRIRISSSDQKQEMYRLVHVIGTSNIAESYNIGSKTTGIVLEISNLNKKEVIKISEISDQAFSEEECKRLRQSIKYGFSRRLTVGQIMEKALILQAVRVNDLLEGEMLQLNHLRDRASEKGHRKEYPLLSITLFFLLKLDCG 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2358 644 CDD SWIB-MDM2_like 334 409 - -
Alju09g2358 644 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 69 629 - -
Alju09g2358 644 MobiDBLite consensus disorder prediction 273 306 - -
Alju09g2358 644 ProSiteProfiles Zinc finger PHD-type profile. 111 177 IPR019787 -
Alju09g2358 644 MobiDBLite consensus disorder prediction 287 304 - -
Alju09g2358 644 SUPERFAMILY FYVE/PHD zinc finger 108 165 IPR011011 -
Alju09g2358 644 SUPERFAMILY Plus3-like 469 597 IPR036128 GO:0003677
Alju09g2358 644 Pfam SWIB/MDM2 domain 336 409 IPR003121 -
Alju09g2358 644 Gene3D SWIB/MDM2 domain 320 418 IPR036885 -
Alju09g2358 644 ProSitePatterns Zinc finger PHD-type signature. 114 174 IPR019786 -
Alju09g2358 644 SUPERFAMILY SWIB/MDM2 domain 332 410 IPR036885 -
Alju09g2358 644 CDD PHD5_NSD 113 158 - -
Alju09g2358 644 ProSiteProfiles Plus3 domain profile. 468 601 IPR004343 GO:0003677
Alju09g2358 644 Pfam Plus-3 domain 473 576 IPR004343 GO:0003677
Alju09g2358 644 MobiDBLite consensus disorder prediction 83 102 - -
Alju09g2358 644 MobiDBLite consensus disorder prediction 80 102 - -
Alju09g2358 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 204 IPR013083 -
Alju09g2358 644 ProSiteProfiles SWIB/MDM2 domain profile. 328 411 IPR003121 -
Alju09g2358 644 SMART swib_2 329 414 IPR019835 -
Alju09g2358 644 FunFam Zinc finger CCCH domain-containing protein 19 103 203 - -
Alju09g2358 644 SMART PHD_3 113 159 IPR001965 -
Alju09g2358 644 MobiDBLite consensus disorder prediction 1 30 - -
Alju09g2358 644 Gene3D - 469 598 IPR036128 GO:0003677
Alju09g2358 644 SMART rtf1 468 578 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2358 Alju-ChrAlju09 46600494 46603875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2358 111 191 PHD Transcription Factor Family AT5G36670 35.714 1.53e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Alju09g2358 Plus-3 2.2e-22 No_clan