Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2357 ATGATTGGAGGTTACTATTGTAGGACTTCTGAGCAGGCATGTAAAGCTGGCTGTTCAGAATTATGGATTATAGCTGTTCCTTGGTTTGGCCAGTGTGTGGAGAAGTTGCAATTATTGAACTCACCTGAGGAACGACAGCGAAGGCTGGATGAAATTCCAAAAGTATACTCTCATCCAAATATGAATTCAATGTTTGACTCTGATGAAGATGCTGAAAAGTCAGATGAAAGGAAGCAAGATGACAATGTACAGTCTAAAAATTCTGGATTTAATAGAAGGGGGAGAGAGCCTAGTTCTCCAAGAAGTCAGAATGGTGTACTAAATGATGTTGGATGCAGAGCACTAGACTTTTTGGTCACTGCCCATGAACAGATTGGGAATACATCCACAATGAAGAACCAGACCAGTCCAAATGATACAGCAAATGGTGATAGCAATAATTTAGTGGTGGCAATGTCAGGGACATCTGGTGTTGCATCAGGCCCTCCATCTTTGCCTTTCTCTACAGGGAAGGAGCAGCCATTTAATGATCTTGCAACTGATGAGCTATGGCACTATCGGGATCCATCTGGGAAGATTCAAGGACCATTTTCTTTGCTAATGTTGTATAAGTGGAACACTAGTGGGCATTTCCCTTCTGATCTCAGAATATGGAAGAACACTGAAAAACAAGATGACTCTATATTGTTAACTGATGTATTAAGTGGGAAGTGTTTTAAAAATGCGTCATTGTCATGCAATAGCCAGCTCCTATCTTTAGGGATCAGGGCTGCACAGGGTGACGAAGATGATATTGATTTGCATAGTGGCACTCCTGTAACCAGTTCCTCAACTTGCGTAGATTCTACATCTACTATTGTTCCTGCTAAAAAATCATCACCGAAAAACTCTCAAATTGGTTGTCTGGAGTTGCCTGGTGACAACTCTAAGCCAACTCATTCTGGACTTACGGGTCAGTCTGCTGAAAATAAACATTCCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACGCCACTTCCAGAAGTGACTGTTGAGTGGAGAAGATGTTCACCAGCTCCGCCTAATCCTTCTGTTGGGGAATGGGACTCCAATCTTGTCTCTGTATCTTCATTGAAGCCAGCTGAAGCTGTTGGTGATTGTACTGCCACTCCTTCAATATGCGATCAACTAACACATTCTTCCCCACCCAATCCAGCCTGTAATACAACCACGTGGCAGGAAATTATTGATGAACAAAATGATTTTGGATCATTTGATGATGAAACAGTTTCAGATCTGTTGGCAGAAATGGAGGCAATGGGGTCTCTTGGTGGCTTGGAATCCCCCTCATCGATCATGAAATGTGGTGAGGAATTGACTGAGGGTTCTAATTGTCTCAGCCCTGCAGAGGGGCTTAGTCCAATGCCTGATGCAGGGAAAGGCGATGCCCTGAGCTCCACTGGAGATCTACAATTTCCCTCTCAATCCACGGCACCAGAGGTGCCATTATGCCAACCAGATGTACATTACCACCAAAGAATCTCTGGAGGGCATTCTGGCAGAAATTCTGAAGTAGTTGGCTCAAAGAATAGTGTTTCAGGTAACCAATGGAAGTCAGGTTCAGGAATTCCATCCACAGCAACCTGGGCCATGCCTACAGAGGCTACTTGGAGACTCGGGCAAGATAGCAGAAGTGGTTGGGAGGCATCTCAGGTAAATACGAACTTGGGCTGGGGTGGAATGGATAATAAAGGAAATGCAAACACAAGCTGGGGAGTAGGACAGGGGACAGTGCAGGAAAACAGGAACACAAATTCATACTCTTCCGTAGGAAATCCAGGCACTGGGGGGAACCAAGCTAGATATGGCAGCGATCGATTTTCTCCCCGGGGTAGGGATATGAATTCTGGTAAAGGTAGACATGTGTGGAACAGGCAACCTTTTGGTGGCGGAAATGGTGGCTCCCAAAGGCCTCCGCCTAGAGGGAACCGAATCTGTAAATTTTACGAAAGCGGGCACTGTAAGAAGGGAGCATCATGTGATTACTTGCACCCATGA 2040 0.4515 MIGGYYCRTSEQACKAGCSELWIIAVPWFGQCVEKLQLLNSPEERQRRLDEIPKVYSHPNMNSMFDSDEDAEKSDERKQDDNVQSKNSGFNRRGREPSSPRSQNGVLNDVGCRALDFLVTAHEQIGNTSTMKNQTSPNDTANGDSNNLVVAMSGTSGVASGPPSLPFSTGKEQPFNDLATDELWHYRDPSGKIQGPFSLLMLYKWNTSGHFPSDLRIWKNTEKQDDSILLTDVLSGKCFKNASLSCNSQLLSLGIRAAQGDEDDIDLHSGTPVTSSSTCVDSTSTIVPAKKSSPKNSQIGCLELPGDNSKPTHSGLTGQSAENKHSWSTASSLVGGGTPLPEVTVEWRRCSPAPPNPSVGEWDSNLVSVSSLKPAEAVGDCTATPSICDQLTHSSPPNPACNTTTWQEIIDEQNDFGSFDDETVSDLLAEMEAMGSLGGLESPSSIMKCGEELTEGSNCLSPAEGLSPMPDAGKGDALSSTGDLQFPSQSTAPEVPLCQPDVHYHQRISGGHSGRNSEVVGSKNSVSGNQWKSGSGIPSTATWAMPTEATWRLGQDSRSGWEASQVNTNLGWGGMDNKGNANTSWGVGQGTVQENRNTNSYSSVGNPGTGGNQARYGSDRFSPRGRDMNSGKGRHVWNRQPFGGGNGGSQRPPPRGNRICKFYESGHCKKGASCDYLHP 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2357 679 MobiDBLite consensus disorder prediction 571 658 - -
Alju09g2357 679 CDD GYF 181 236 IPR003169 GO:0005515
Alju09g2357 679 MobiDBLite consensus disorder prediction 506 541 - -
Alju09g2357 679 SUPERFAMILY CCCH zinc finger 654 678 IPR036855 GO:0046872
Alju09g2357 679 MobiDBLite consensus disorder prediction 571 616 - -
Alju09g2357 679 ProSiteProfiles GYF domain profile. 181 235 IPR003169 GO:0005515
Alju09g2357 679 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 31 244 - -
Alju09g2357 679 MobiDBLite consensus disorder prediction 65 83 - -
Alju09g2357 679 MobiDBLite consensus disorder prediction 310 335 - -
Alju09g2357 679 SMART gyf_5 182 237 IPR003169 GO:0005515
Alju09g2357 679 MobiDBLite consensus disorder prediction 510 541 - -
Alju09g2357 679 MobiDBLite consensus disorder prediction 84 106 - -
Alju09g2357 679 Gene3D - 183 238 IPR035445 -
Alju09g2357 679 Pfam GYF domain 184 224 IPR003169 GO:0005515
Alju09g2357 679 MobiDBLite consensus disorder prediction 302 338 - -
Alju09g2357 679 ProSiteProfiles Zinc finger C3H1-type profile. 654 679 IPR000571 GO:0046872
Alju09g2357 679 SUPERFAMILY GYF domain 179 234 IPR035445 -
Alju09g2357 679 MobiDBLite consensus disorder prediction 50 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2357 Alju-ChrAlju09 46597813 46600418 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju09g2357 GYF 3e-13 CL0673