Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2354 ATGTGGTTAGACGACTGGGACAAATTAGTCAAAAGGCAGGAGCCATTCCTAAGTCGTCACAAGCTTTGTTCTCATACCAACTTATTCTTCGTTATGTACGTATTCTCTCATTCAATGCTTTACCAAACTCACCACCCTCTTCTCTTTCACCCCCCTCCTTCCTTATCTCACTTCCCACCTTCCTCTCCTTTCTTTCATCTCTCTCTTCCTCAGGCCGAAACCCAAATGGAGTGCCTCCAAGCGGCGCTGAAGACCGGTTTTACCAGAGACGCAGCCGTGAAACTTAACCCTCTGTCTTCTGCTGACGACTCCTCCGCCTTCAATCTCCCAAATGCCGCCCCTTCCGACGACTTCTCTGTTGACGAACTCCTCGACTTTTCACACTTGGAAGAGCCATTCGAAGATGAAAACCACCAAAAGCCCGACTCTGCTTCTGTTTCCCCTCCAACTGTGGGCCCAAGTCATGAAATTTGTCACTTTACCTTCCCCTGTTCTGTCAAAGACGATGTTGGCTCCTTGCCGTCCAGCGAACTCAGCGTTCCGGCCGATGATTTGGCGAACTTAGAGTGGTTGTCTCATTTTGTCGAGGATTCCTTCGCCGTACATTCCTCTGCTTATCCCGCCGGAACTCTCATGGGAAAACCCAAGGGCCATGCCGAGCAAAGGCCTGAACCAGTCGGCCGTGTTTCGACTCATCCCTGTTTTAAAACTCCGGTTCCGGCTAAGGCCAGAAGCAAGAGAACGAGAACCGGAGTTCGGGTCTGGCCTTTCAGGTCTCCATCCTTTACGGAGTCATCTTCAAGCTCCTCGTCGTCTTCCTCATCCTCAACTCCCACGAGCCCCCTGTTCATTTCCGCCAGCGCAGGGCCCGAACAAGTTTGCTCTGAGGCCAAGCCACCGGCGAAGAGACCCAAGAAAAAGCCTTCGCCGGAGGGTGTTGCGGGGACCGGCGGAACAACGCAGACGCCACGCCGGTGCACCCATTGCGGGGTCCACAAGACGCCGCAGTGGCGAACTGGCCCAATGGGAGCGAAAACGCTCTGCAACGCATGCGGGGTCCGGTACAAGTCGGGTCGGCTTTTGCCGGAATACAGGCCAGCGTGTAGCCCGACGTTCTCGAGCGAACTGCACTCGAACCACCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGGAGTGGGCGGAGGCGAGTCCTGTCTGGGCGGGGACCCGACTCCAGCAGTTTCGAGTTTTTGA 1239 0.5504 MWLDDWDKLVKRQEPFLSRHKLCSHTNLFFVMYVFSHSMLYQTHHPLLFHPPPSLSHFPPSSPFFHLSLPQAETQMECLQAALKTGFTRDAAVKLNPLSSADDSSAFNLPNAAPSDDFSVDELLDFSHLEEPFEDENHQKPDSASVSPPTVGPSHEICHFTFPCSVKDDVGSLPSSELSVPADDLANLEWLSHFVEDSFAVHSSAYPAGTLMGKPKGHAEQRPEPVGRVSTHPCFKTPVPAKARSKRTRTGVRVWPFRSPSFTESSSSSSSSSSSSTPTSPLFISASAGPEQVCSEAKPPAKRPKKKPSPEGVAGTGGTTQTPRRCTHCGVHKTPQWRTGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEGVGGGESCLGGDPTPAVSSF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2354 412 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 322 383 - -
Alju09g2354 412 CDD ZnF_GATA 325 373 IPR000679 GO:0006355|GO:0043565
Alju09g2354 412 MobiDBLite consensus disorder prediction 391 412 - -
Alju09g2354 412 MobiDBLite consensus disorder prediction 259 286 - -
Alju09g2354 412 MobiDBLite consensus disorder prediction 133 152 - -
Alju09g2354 412 ProSiteProfiles GATA-type zinc finger domain profile. 320 356 IPR000679 GO:0006355|GO:0043565
Alju09g2354 412 Pfam GATA zinc finger 326 360 IPR000679 GO:0006355|GO:0043565
Alju09g2354 412 SMART GATA_3 320 374 IPR000679 GO:0006355|GO:0043565
Alju09g2354 412 FunFam GATA transcription factor 318 399 - -
Alju09g2354 412 Gene3D - 317 393 IPR013088 GO:0006355|GO:0008270
Alju09g2354 412 ProSitePatterns GATA-type zinc finger domain. 326 351 IPR000679 GO:0006355|GO:0043565
Alju09g2354 412 MobiDBLite consensus disorder prediction 213 334 - -
Alju09g2354 412 PANTHER GATA TRANSCRIPTION FACTOR 109 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2354 Alju-ChrAlju09 46549287 46551094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2354 80 402 C2C2-Gata Transcription Factor Family AT5G66320 52.000 9.28e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju09g2354 GATA 2.4e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2354 09 46549287 46551094 Alju12g0020 12 380336 381394 CCT
Alju12g0020 12 380336 381394 Alju09g2354 09 46549287 46551094 ECH
Alju09g2354 09 46549287 46551094 Alju09g2354 09 46549287 46551094 ECH