Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2352 ATGGGAAGAGGTAAGATTGAGATCAAGCTGATAGACAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGACGTAACGGCATCTTCAAGAAGGCTCATGAGCTCAGTGTTCTCTGTGATGCTAAGGTCTCTCTCATCATGTTCTCTAAAAGCAACAAGATGCACGAATATGTCACCCCTGGCCTTACAACCAAGAAAATGATTGATCAATACCAGAAGGCGTTGGGGAATGTTGATTTGTGGATTGTCCACTACGAGAGAATGCTGGAAAAGCTAAGGAAACTGAAGGAGATTAACAATAAGCTCAGAGGAGAGATCAGGAATAGGTTGGGGGCAGATTTGGACAATCTGAACTTTCAGCAGCTACACAGTCTTGAGGAGGACATAATTTCTTCCTCTGCAATGATACGAGAAAGGAAGCTTCATGTGATCAAAACTCGGACCGAGACCTGCAAGAAAAAGGTAAAAAACTTGGAGCAGGTGAACGAGAGTTTAGTGCTTGGAATTGACCAGTATATGGTGCATCCACATTACATGATGATGTAG 546 0.4396 MGRGKIEIKLIDNPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKSNKMHEYVTPGLTTKKMIDQYQKALGNVDLWIVHYERMLEKLRKLKEINNKLRGEIRNRLGADLDNLNFQQLHSLEEDIISSSAMIRERKLHVIKTRTETCKKKVKNLEQVNESLVLGIDQYMVHPHYMMM 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2352 181 Coils Coil 85 105 - -
Alju09g2352 181 Pfam K-box region 84 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju09g2352 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Alju09g2352 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Alju09g2352 181 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju09g2352 181 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Alju09g2352 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju09g2352 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju09g2352 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju09g2352 181 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Alju09g2352 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju09g2352 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju09g2352 181 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Alju09g2352 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2352 Alju-ChrAlju09 46529884 46531306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2352 1 181 MADS-box Gene Family AT3G54340 51.381 4.96e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju09g2352 K-box 5.9e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2352 09 46529884 46531306 Alju09g2352 09 46529884 46531306 ECH