Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2338 ATGGCGGGTTTGTTCTCACTAGGCGGTGGCGGAGGAGGAGGTAGGGGAGGAGGGAGCAACCAAGAAGACGAACCCGGCCACCACCATAATAACCCACCCACCGGAGTTCCTCATCCGGACGCCGCCTATTTTTGGTACAAGAATAATGAAGACGTGTCTTGTTACAGAGGCTTCGAGCTGTGGAACCAGCAACCGGTGATGCCTCCTCAAGCGAGGCCACTTCTCCCCCAAGATCTTTACTCCTTAGGGGTGGGGCCGAGCAGCAGGAGCTCCGATGATCAGTCGTCGTCGAGATCGGGCGCCATGATGATGATGCGTTCCGGCGGCGGAAGCAGCGGCGGCGGAGGAATAAGCTGCCAGGACTGTGGGAACCAGGCCAAGAAGGACTGCCCACACATGCGGTGCAGGACTTGCTGCAAGAGCCGTGGCTACGACTGTCATACCCACGTGAAGAGCACTTGGGTTCCCGCCGCCAAGCGACGGGAACGACAGCAGCAGCAGCAACTTCAGCTTCGAGGAGGAGCAGCAGACAACAATCCCAAGAGGCTGAGAGATACCACTTGTAATAATAACCCCAGCACTTCCACTGCTCATGTGCAAATGGCTACTACACACTCTTCATCAGCAGAAGGGTTAGAACATGGGAGTTTTCCGGCGGTGGTTAGTTCCTCGGCGGAGTTCCGGTGCGTACGGGTTAGCTCCATGGACGAGGCTGACGAGCAATACGCATACCAAACGGCGGTGAACATCGGAGGCCACGTTTTCAGAGGAATTCTCTATGACCAAGGCCCTGATCCCAATTACATGTCCACCGCTGATACCTCTCCCGGTGGAGCCGTTCAGCCCCTCAACCTCATTGCCGCCACTGGTGCTTCTGCTCTTCCAGCCGCTGCCGCAGCAAGCGGTGGTGGTGCCGTAGCCGCCGGGGCTTCTTCCTCCACGGGGCCGCTTCTCGATCCTTCCTTGTATGCGGCGCCACTTAACCCTTTCATGTCTGGCAGTGGTACGCAGTTCTTTCCTCACCCAAGATCTTGA 1035 0.5768 MAGLFSLGGGGGGGRGGGSNQEDEPGHHHNNPPTGVPHPDAAYFWYKNNEDVSCYRGFELWNQQPVMPPQARPLLPQDLYSLGVGPSSRSSDDQSSSRSGAMMMMRSGGGSSGGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCHTHVKSTWVPAAKRRERQQQQQLQLRGGAADNNPKRLRDTTCNNNPSTSTAHVQMATTHSSSAEGLEHGSFPAVVSSSAEFRCVRVSSMDEADEQYAYQTAVNIGGHVFRGILYDQGPDPNYMSTADTSPGGAVQPLNLIAATGASALPAAAAASGGGAVAAGASSSTGPLLDPSLYAAPLNPFMSGSGTQFFPHPRS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2338 344 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 21 328 IPR007818 GO:0003700|GO:0006355
Alju09g2338 344 MobiDBLite consensus disorder prediction 182 196 - -
Alju09g2338 344 MobiDBLite consensus disorder prediction 1 36 - -
Alju09g2338 344 MobiDBLite consensus disorder prediction 83 102 - -
Alju09g2338 344 NCBIfam LRP1 C-terminal domain 217 264 IPR006511 -
Alju09g2338 344 MobiDBLite consensus disorder prediction 77 116 - -
Alju09g2338 344 NCBIfam putative zinc finger domain, LRP1 type 118 160 IPR006510 -
Alju09g2338 344 Pfam Domain of unknown function (DUF702) 116 265 - -
Alju09g2338 344 MobiDBLite consensus disorder prediction 159 196 - -
Alju09g2338 344 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2338 Alju-ChrAlju09 46400675 46402312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2338 1 333 C2H2 Transcription Factor Family AT5G66350 47.324 1.77e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Alju09g2338 DUF702 5.7e-63 No_clan