Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2309 ATGAATGATCTGATGACGAAATCGTTTCTAAGTTATGTTGAACTGAAGAAACAGGCCCGAAAGGACCTTGAAGCCGATCTTGACATCGAATTAGGGCAATTCAATCCCATTGAAGACCAAAACCTGTCTCAGTTCTTTGAAGAAGTGGATGCCATCAAATCCGAAATGGAAGAGATTACTAATCTCTTATCTGATCTTCAACACCTGAATGAAGAAACAAAATCAACCCACAGCACCAAGGTTCTTCGTGGGCTCAGAGACCGAATGGAGTCAGACATGGTTACCATTCTTCGCAAAGCAAATAGCATCAGGTCTAGGCTTGAATCGCTTGACCAATCCAATAAAGAAAATCGAAAAACATCAGAATCTTTCAAAGAAGGAACCCCAGTCGATAGAACGAGAATATCAGTCACAAGTGGCCTAAGAGTCAAGCTTAAAGACTTGATGAATGAATTTCAATCCCTGAGAAACAAGATTCTATCTGATCACAAGGAGGATTTAAAGAGAAGATGTTATACTGCAATAGGGGAGATACCAAGCGATGAAATAGTGGAGAAGATGGTTTCTGGGAGTGTCAACGTTGATTTTTTCAAAACAGATTCTGACATGACGACTGAGACTCAGATTAGGCACCAGGCTGTGATGGATATACAGAGAAGTTTGGATAAACTTCATAAGGTTTTTCTTGACATGGCTATTATTGTGGAGACACAAGGCGAGCAAGTGGACAACATTGAAGATAATGTAGCCAATGCTAGGAGCTTCATTCATGGTGGGACTAATAGTCTTTACTATGCTAATCAGATGAGGAAGAACAAGAAATGGGCATGGTGGGTTTGTGCTGTGGCACTGATTATTCTTCTGGTATGCTTAATTGCACTCTTAGCTTCTTGA 894 0.4049 MNDLMTKSFLSYVELKKQARKDLEADLDIELGQFNPIEDQNLSQFFEEVDAIKSEMEEITNLLSDLQHLNEETKSTHSTKVLRGLRDRMESDMVTILRKANSIRSRLESLDQSNKENRKTSESFKEGTPVDRTRISVTSGLRVKLKDLMNEFQSLRNKILSDHKEDLKRRCYTAIGEIPSDEIVEKMVSGSVNVDFFKTDSDMTTETQIRHQAVMDIQRSLDKLHKVFLDMAIIVETQGEQVDNIEDNVANARSFIHGGTNSLYYANQMRKNKKWAWWVCAVALIILLVCLIALLAS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2309 297 CDD SynN 42 191 IPR006011 GO:0016020
Alju09g2309 297 FunFam Syntaxin 132 198 296 - -
Alju09g2309 297 CDD SNARE_syntaxin1-like 206 263 - -
Alju09g2309 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Alju09g2309 297 Gene3D - 38 168 - -
Alju09g2309 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Alju09g2309 297 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Alju09g2309 297 SMART SynN_4 37 164 IPR006011 GO:0016020
Alju09g2309 297 MobiDBLite consensus disorder prediction 109 129 - -
Alju09g2309 297 Pfam SNARE domain 240 289 IPR000727 -
Alju09g2309 297 MobiDBLite consensus disorder prediction 108 130 - -
Alju09g2309 297 SUPERFAMILY t-snare proteins 40 259 IPR010989 GO:0016020|GO:0016192
Alju09g2309 297 PANTHER SYNTAXIN 44 286 IPR045242 -
Alju09g2309 297 Coils Coil 49 76 - -
Alju09g2309 297 SMART tSNARE_6 199 266 IPR000727 -
Alju09g2309 297 Gene3D - 198 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2309 Alju-ChrAlju09 46178429 46179322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2309 1 297 SNARE and Associated Proteins AT2G18260 59.283 1.11e-128 367