Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2306 ATGGGTACTGATACCGGTGAAGTAGCACGCACGCTGACAAATCCTTGCTCGTTCAAGGTGCATCATACAATGTGCATGGAACTCATGAGATTAGTTGATAGAATCTCAAAGATATTACCAGATATAGAGGCAACACGGCCTCGATACTCATCAGGAATACAGTCTCTGTGCTCTCTAAACACTGCCATTGATAAGGCCAAACTCCTTCTGCAACATTGTTCTGATTGTAGCAAACTATACCTGGCATTGACGGGACATGCGGTCCTCTTAAGATGCTTAAAGGCAAGAAATTCATTAGCAAAAAGCTTGGACAAAATTCAGAGTATGGTTTCAGTTATGTTGGCGGCAAAGATTTCTCAAATAATTGATGATCTGGGATGTGCAACATTCGTTCTGGACTCGTCCGAAGAAGAGGCTGGGAGGGTTGTGAAAGAACTGCTCCAGAAAAGTTCTTCAGCATCGGATTCAATGGAAGATTCTGAGATTAAAGCTCTTCAGATTGCAGCAGCAAGACTTGATATTACATCCTCAAAGGCCATCTTAATAGAGAAAAGATCTATCAAGAAGTTGGTAGACAAACTTGGGCCAAATGAACCCACGAAAAAGATGATCTTGAAGTATCTTTGGTATCTATTGAAAAAGCATGGAAACCATATCATGGGAGGTCAAATTGGAATGGTCGATGCTCAAAATGATCAACCAATTGCAACTGATAAATCAAGTCACAGTCCTTCTCATAGTCATTGTGCTGGTCAATGTAGAACTCAGTCGATTCACACCCATGAGTTGAGCAGAGCTATCTCTCCTGAGGAATACAGGTGCCCAATGTCTTCAGCCTTGATGTATGATCCTGTTGTGATTGCTTCTGGGGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAAGGTCATGATATATGCCCAAAAACTGGGAAGAAACTGGCTAATATGTCAGTGACACCAGATACAGCAATGAAGGACTTAATATCGGAATGGTGCAGAGAGAATGGAGTCATCATTACTGACCCTAGCAGGCGAGCAGCAAAGTTCAGTTCACGAAAATCTTCCTTTGCTTCCATTGCGAGCTTTAACGTTACATTGAATAAATTACACTTGCCAGTGGATCTTAGCATCGTGTCAATTGAATCAACAGATAGTTATGATTCAGATTCCTCGCAGACTTTAACTACTCATCACTTGATGCTCGTGAGGACTAATGATAATTCTTACAGTAGTCATGAATCTCATGCACTCAAAGATGGTGCAGATTCAATGCTTTTGTCTCAATTCCCTGATCTTCCATGGGATTCTCAATGCCAAGTCATCGAAGATCTGATAGTTTGTTTGAAAAGCGACTGCCAACCTTTTTGTGCTTCATCAGCTGAGGGTTTCATTGAATCACTCATCAAATTTTTGAACAATGCATATGACCTGCAAGACATAAAAGCTCTGAGAGCGGGAATGCAGCTGTTCTTAGAATTTGTAAACAAGCACAGAAACAGCAAAAAGTATCTAAGTGAGGATTCATTCAGTGTGTTGGGCAATCTTCTTGATTCAGAAGTTAAAGGAGAAGCTCTTGCCGTGATGGAAAAACTATCCGAGTGTGAGCATAGTAGAGCTAAAATTGCAGCATCCAGTGCACTTGCTTCCATTTTAAAGATTCTTGACTCCGAGAGCAGAGAGATCCAACAACAATCTATTCGAATAATGCACAATTTGTCCTTCAACAGTGAAGCTTGTTACCACATGGTATCTCTCCATTGCATAATCCCAGAATTACTGCCATTTTTGAAAGATGGGACTTCGTTAAGATACTGCATATGCATATTGAAAAACCTTTGTGATACGGGAGAGGGTAGGATTTCTGTTGCCAAAACGGAAGGATGCATAACTTCTATTGTTGAAATACTTGAGACTGACAGTGACGAGGAACAAGAACATGCACTGGATGTCCTACTTTCTTTATGCTCTCTAAGTTCTGATTATTGTAAGCTGGTCGTGGAACAAGGGGAATGGGTTATTTCTTCCCTTTTCTTTATTGCCAATAATGGCAAAGACAAAGGAAAGGTGAGTGCATTGAAGGTGCTCGGACTTTTGATGGATAATGCAAGAGTTGAAAATGAAGAAAGGTCTAAACCAACTCCCAGAACTTCTCAAGAACCTAACAATCGCCCTCGACAAAAGAAATCATCAAAAATATCTGCATCTTTCAAGAAGTTTTTGGTTTCTTGCATTACAGGTAAGAGATGA 2256 0.4047 MGTDTGEVARTLTNPCSFKVHHTMCMELMRLVDRISKILPDIEATRPRYSSGIQSLCSLNTAIDKAKLLLQHCSDCSKLYLALTGHAVLLRCLKARNSLAKSLDKIQSMVSVMLAAKISQIIDDLGCATFVLDSSEEEAGRVVKELLQKSSSASDSMEDSEIKALQIAAARLDITSSKAILIEKRSIKKLVDKLGPNEPTKKMILKYLWYLLKKHGNHIMGGQIGMVDAQNDQPIATDKSSHSPSHSHCAGQCRTQSIHTHELSRAISPEEYRCPMSSALMYDPVVIASGETYERMWIQKWFDEGHDICPKTGKKLANMSVTPDTAMKDLISEWCRENGVIITDPSRRAAKFSSRKSSFASIASFNVTLNKLHLPVDLSIVSIESTDSYDSDSSQTLTTHHLMLVRTNDNSYSSHESHALKDGADSMLLSQFPDLPWDSQCQVIEDLIVCLKSDCQPFCASSAEGFIESLIKFLNNAYDLQDIKALRAGMQLFLEFVNKHRNSKKYLSEDSFSVLGNLLDSEVKGEALAVMEKLSECEHSRAKIAASSALASILKILDSESREIQQQSIRIMHNLSFNSEACYHMVSLHCIIPELLPFLKDGTSLRYCICILKNLCDTGEGRISVAKTEGCITSIVEILETDSDEEQEHALDVLLSLCSLSSDYCKLVVEQGEWVISSLFFIANNGKDKGKVSALKVLGLLMDNARVENEERSKPTPRTSQEPNNRPRQKKSSKISASFKKFLVSCITGKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2306 751 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Alju09g2306 751 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Alju09g2306 751 MobiDBLite consensus disorder prediction 708 736 - -
Alju09g2306 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 343 IPR013083 -
Alju09g2306 751 Gene3D - 605 714 IPR011989 -
Alju09g2306 751 PANTHER U BOX DOMAIN-CONTAINING 23 709 - -
Alju09g2306 751 SUPERFAMILY ARM repeat 437 704 IPR016024 -
Alju09g2306 751 SUPERFAMILY RING/U-box 268 344 - -
Alju09g2306 751 Gene3D - 458 604 IPR011989 -
Alju09g2306 751 CDD RING-Ubox_PUB 269 316 IPR045210 -
Alju09g2306 751 Pfam U-box domain 269 338 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2306 Alju-ChrAlju09 46165533 46168593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2306 4 723 U-box Gene Family AT1G24330 31.995 6.83e-107 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2306 09 46165533 46168593 Alju12g0059 12 812805 815975 CCT
Alju09g2306 09 46165533 46168593 Alju09g2306 09 46165533 46168593 ECH
Alju12g0059 12 812805 815975 Alju09g2306 09 46165533 46168593 ECH