Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2301 ATGGAACTGAGAGGTTTAGATAAGGAAATAGAGATGCCATTACCAACCACTTCAGGTTATAATCCCTCCAATAGGGACTCATCTTCTTCTCCAACTCTAGCTTCAACAGCAGGCGAAACGACGAGTGATCATCAACCTCCTCAAAGTTCAGACCACTATCATCATCATCATCCTCCTTCTCTGCCATCGAACCATCTTCAGCAATTGCAGAGAAACACAAGAGATCCAGATCGGCCGAGCGTAACGGCGATCACACCGATTGCTAGCAGATCAAACCCAAGACCAGCAATTAGGTACAAAGAATGCTTGAAGAATCATGCGGCGAGCATGGGAGGACACGTCGTGGATGGATGCGGCGAGTTCATGCCAAGCGGAGAAGAAGGCACTCCACAATCATTGAGATGTGCTGCTTGTGACTGCCACCGGAATTTCCACCGGAAAGAGACCAACGGTGAGCCTCAACCTAATGTTCTCAATTACTACGCCTACCCTCCCAGCAAAAGCAATAACGCACCAAGTAGGATTCTGTCTCCCCAGTTTCCACCACCCCCTCCTTCTCTACATCATCATCAGCAACATATGAGGTTTTCAGGAGGGTCGTTCCCGCCGTTGATGGTGGCCTTCGGCGGAGGCGGTGGGGCGGCGGAGTCTTCAAGCGAAGATCTGAACATGTTTCAGTGTAATGAAGCGGGAGGGCAAGGTTCAGTGCAGGCGGGAGCGTCATCGAAGAAGAGGTTTAGGACCAAGTTTAGCCAGGAGCAGAAGGAGAGGATGATGGAGTTCGCTGAGAAGTTGGGATGGAGGATCCAGAAACATGATGAGCAAGAAGTACTACAGTTTTGTAATCAAGTGGGTGTGACACGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAGCAGGTCATGAGGAAGAAGCAAATGTAA 924 0.4957 MELRGLDKEIEMPLPTTSGYNPSNRDSSSSPTLASTAGETTSDHQPPQSSDHYHHHHPPSLPSNHLQQLQRNTRDPDRPSVTAITPIASRSNPRPAIRYKECLKNHAASMGGHVVDGCGEFMPSGEEGTPQSLRCAACDCHRNFHRKETNGEPQPNVLNYYAYPPSKSNNAPSRILSPQFPPPPPSLHHHQQHMRFSGGSFPPLMVAFGGGGGAAESSSEDLNMFQCNEAGGQGSVQAGASSKKRFRTKFSQEQKERMMEFAEKLGWRIQKHDEQEVLQFCNQVGVTRQVFKVWMHNNKQVMRKKQM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2301 307 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 98 148 IPR006456 -
Alju09g2301 307 Gene3D - 229 303 - -
Alju09g2301 307 NCBIfam homeobox domain, ZF-HD class 243 300 IPR006455 -
Alju09g2301 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 99 148 IPR006456 -
Alju09g2301 307 FunFam Zinc-finger homeodomain protein 2 231 304 - -
Alju09g2301 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 68 300 - -
Alju09g2301 307 Pfam ZF-HD protein dimerisation region 97 149 IPR006456 -
Alju09g2301 307 SUPERFAMILY Homeodomain-like 232 304 IPR009057 -
Alju09g2301 307 MobiDBLite consensus disorder prediction 1 92 - -
Alju09g2301 307 ProSiteProfiles 'Homeobox' domain profile. 241 305 IPR001356 GO:0003677
Alju09g2301 307 MobiDBLite consensus disorder prediction 61 89 - -
Alju09g2301 307 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2301 Alju-ChrAlju09 46115380 46116303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2301 48 307 ZF-HD Transcription Factor Family AT2G18350 47.636 1.77e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Alju09g2301 ZF-HD_dimer 3.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2301 09 46115380 46116303 Alju12g0062 12 838208 838969 CCT
Alju09g2301 09 46115380 46116303 Alju09g2301 09 46115380 46116303 ECH
Alju12g0062 12 838208 838969 Alju09g2301 09 46115380 46116303 ECH