Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2291 ATGCCATTCGAATATTGTCGCCTAGGCCAGAACGCAGAGTGTAGATTTTCAGCTCGTGATCATCTGCAAAAAGGTCTCGACCAAGATTCCAAGCTTGCTTATTCAAATGAAATCATGATTGGAAATGAAAAGGCAGGAAGGCTTATTCGAGTTGCTGCTCGTAGTTTACAAGGCGAGAATAGAGAGCATCTTTTGGAAAGAGGTGGTCGTCCCGTTTGTCGAACTCAGGTCGGCGAGTTTGTCTGTGTGAGCTCGCTCGCCTTGAAACTGCAAAAGGGTCTTAGACACAAGGCAAATATGATGCACCGTTGCTGTGGCTCTCATCAGGGGCACGTGATGGGACCGTGTACATGTGGTATGATTCACGGCCAAACCACTTCCTTCTCTATGCTCTTCTCCATGCCCAACCACAAATCCTACGGTAGCGACTGCGATAATATGTATTCTTTCGCCGCCACCTCTCCTTCCTCTTCTTCCGTTGACTGCACCCTCTCTCTCGGCACCCCCTCCACCCGTTTATCCCAAGACGAAGAAAAACGCCACCGCCATCACCCTCGCTCCGTATCAAACTTCTGTTGGGATTTATTACAATCCAAACACACATCTGAGTCCCACACCAAGTCCACTCGCAACTCCAATACTAGTAACTCCTCTAACAATGATCCCCTCCTCGCTCGTCGTTGTGCTAACTGTGACACCACTTCCACTCCCCTCTGGAGAAATGGCCCTCGAGGCCCCAAGTCGCTATGCAATGCCTGTGGGATTCGGTTCAAGAAGGAAGAGAGGAGGGCAGGTGCGGTGGCCGCCACGACGGCGGCCAACTCAGGCGGCGTTATGGAGTCGGCGCAGATGTTTACCGGACACCATAACACTTCATGGTACGCGCACTCTCAGAGCCAGAAAATGATGGGCAATGAGTTTCGCTTTGTGGATGACACCGCCGACAGGGACGGCGACCGCGGCAGCATTCCGTTTCTGTCTTGGAGGCTCAACGTTACGGACAGACCGAGCCTTGTTCATGATTTTACGAGATGA 1035 0.5169 MPFEYCRLGQNAECRFSARDHLQKGLDQDSKLAYSNEIMIGNEKAGRLIRVAARSLQGENREHLLERGGRPVCRTQVGEFVCVSSLALKLQKGLRHKANMMHRCCGSHQGHVMGPCTCGMIHGQTTSFSMLFSMPNHKSYGSDCDNMYSFAATSPSSSSVDCTLSLGTPSTRLSQDEEKRHRHHPRSVSNFCWDLLQSKHTSESHTKSTRNSNTSNSSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAGAVAATTAANSGGVMESAQMFTGHHNTSWYAHSQSQKMMGNEFRFVDDTADRDGDRGSIPFLSWRLNVTDRPSLVHDFTR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2291 344 Gene3D - 224 300 IPR013088 GO:0006355|GO:0008270
Alju09g2291 344 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Alju09g2291 344 PANTHER GATA TRANSCRIPTION FACTOR 18 110 344 IPR044272 GO:0003700|GO:0009908
Alju09g2291 344 SMART GATA_3 222 274 IPR000679 GO:0006355|GO:0043565
Alju09g2291 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 263 - -
Alju09g2291 344 MobiDBLite consensus disorder prediction 203 223 - -
Alju09g2291 344 CDD ZnF_GATA 227 259 IPR000679 GO:0006355|GO:0043565
Alju09g2291 344 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Alju09g2291 344 MobiDBLite consensus disorder prediction 207 223 - -
Alju09g2291 344 Pfam GATA zinc finger 228 262 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2291 Alju-ChrAlju09 46054835 46060529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2291 105 344 C2C2-Gata Transcription Factor Family AT3G50870 43.878 9.59e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju09g2291 GATA 9.6e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2291 09 46054835 46060529 Alju12g0065 12 880361 881219 CCT
Alju09g2291 09 46054835 46060529 Alju09g2291 09 46054835 46060529 ECH