Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2270 ATGATTATCGGCACCCAGCGAGAGAGGCAAGAGCAGAGAGCATATCACGAGGGGCTACGAGGCTTCCACTTCTCTGCTTTTCAGGCAAGGAAAACCCGTTCTGTTCGAATCACACACATTTTCCCTCCTTCTATTTACTTTTGCTGCTGCTCCACTATTTCTCTGTTAGGGCTCAGAATGGAGAACGGAGTGAAGAGCAATGGCGATGCAAAGTCACCGACTTTAGTAGAAAACAATGAGATGGAGACAGAGGAAGTTGATGTTAAGAATGACGAGCCGTTTATATCAAGGTCAATGGAAGAAGAGGAAAAACGGCTTTTGGAAACTCGAATCAAGGAAGAGGAGGAGGAATCCAAACATGAGCCAGATGAGGCACCAAAGCTTAATGATTCTCAGTTTAGCAAGTTGGATGAGCTTTTAACACAAACCCAACTTTACTCGAAATTTCTACTCGAGAAAATGGAAGACATCACACTTAATAGGGGCGAACAAGAGGATGAGCCGGTTGAGAAAAAGAGGGGCCGTGGCTCAAAAAGAAAAGCAAAATCAGAATATAATAATAAGAAAGCCAAAAGGGCAGTAGCTGCCATGCTTACAAGATCAAAAGAAAGTGAGAGTACTCAAGATATGAACCTGACAGAAGAGGAAAGAACTGATAAGGAGCAGAAAGAGCTCATACCTCTACTGACAGGTGGAAAGCTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTCCTTGCACATCTGAAAGGGAATGGTTTGGATGGCCCATATTTGATAATTGCTCCTCTATCAACCCTTTCTAACTGGATGAGTGAAATCTCTCGGTTTGCTCCAACACTCACTGCTATTATTTACCATGGTGACAAGAAGGAAAGAGATGAGCTCCGAAGGAAGCATATGCCCAGAACGGTTAGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAATTGCGTTAAATGATGCTAAGAGATGTCTCAAGTCCTACCATTGGAAATATCTTGTAATTGACGAGGGACACAGGCTCAAAAACTCAAAGTGCAAATTAGTCCAGATGTTGAAATATTTACCCGTTGAAAATAAACTTCTTTTAACTGGGACGCCTCTTCAGAATAATTTGGCTGAGCTATGGTCATTGTTGAACTTCATCTTACCTGACATTTTCGCATCCCAAGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAATTAGAAGAAGGAAGAAGAGCTCAGGTGGTAGCTAAGCTCCATGCTATCCTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATCATTATATATGCTAGTATGACTGAACATCAGAAGAATTTTCAGGAACATTTAATTAATAAGACATTGGAGAAATATCTCCGTGAAAAATCTGCAGGGGGGCGTGCTTCAAAATCTATTCGTAATTTAGTCATTCAGCTTAGAAAGAACTGTAATCATCCCGACCTGTTAGAGTCACCCTTTGATGATTCTTTTTTCTACCCACCTGTCAATGAGATAGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGACTGTTGGCTCATTTACTTGCGCGGAAGCACAAGGTACTAATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGAATTGATGGCAGCATAAAGCTGGATGAAAGGAAAAGACTGATTCAGGAATTCAATGATGCGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGTGGATTGGGAATTAACCTTACTGCAGCTGACACTTGTATCATTTATGATAGTGATTGGAATCCTCAGATGGATTTGCAGGCCATGGATAGATGTCACAGAATTGGTCAAACTAAGCCTGTTCATGTTTACAGGCTTGCAACAGCTCACTCCGTCGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTAATCAAGAACGGATGAAGCCCAACTCTGAGGATGTCGTCAAAGATGAGGATGAGGAATTGTTGGAATTGCTTAAAGAGGAAGAATCTGCTGAAGACAGAGAGATCCTAACAGATATTAGTGATGAAGACTTGGAGAAGCTCTTGGACCGCAGTGATCTTATCTCTGGTAACGTTAATTGTCCGAGCAAAATTCCTCTTAAAGGGCCAGGATGGGAGGTGGTGATTCCAACTGGGAGCGTGCTTTCTACTCTTAATAGCTAA 2391 0.4178 MIIGTQRERQEQRAYHEGLRGFHFSAFQARKTRSVRITHIFPPSIYFCCCSTISLLGLRMENGVKSNGDAKSPTLVENNEMETEEVDVKNDEPFISRSMEEEEKRLLETRIKEEEEESKHEPDEAPKLNDSQFSKLDELLTQTQLYSKFLLEKMEDITLNRGEQEDEPVEKKRGRGSKRKAKSEYNNKKAKRAVAAMLTRSKESESTQDMNLTEEERTDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGNGLDGPYLIIAPLSTLSNWMSEISRFAPTLTAIIYHGDKKERDELRRKHMPRTVSPKFPIVITSYEIALNDAKRCLKSYHWKYLVIDEGHRLKNSKCKLVQMLKYLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFASQEEFESWFNLSGKCSNGATKEELEEGRRAQVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYASMTEHQKNFQEHLINKTLEKYLREKSAGGRASKSIRNLVIQLRKNCNHPDLLESPFDDSFFYPPVNEIVEQCGKFRLLDRLLAHLLARKHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGSIKLDERKRLIQEFNDANSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAHSVEGRMLKRAFSKLKLEHVVIGKGQFNQERMKPNSEDVVKDEDEELLELLKEEESAEDREILTDISDEDLEKLLDRSDLISGNVNCPSKIPLKGPGWEVVIPTGSVLSTLNS 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2270 796 FunFam ATP-dependent DNA helicase DDM1 228 473 - -
Alju09g2270 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 464 IPR027417 -
Alju09g2270 796 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 560 723 IPR001650 -
Alju09g2270 796 MobiDBLite consensus disorder prediction 88 131 - -
Alju09g2270 796 Coils Coil 723 744 - -
Alju09g2270 796 MobiDBLite consensus disorder prediction 162 189 - -
Alju09g2270 796 Gene3D - 235 465 IPR038718 -
Alju09g2270 796 Pfam Helicase conserved C-terminal domain 559 670 IPR001650 -
Alju09g2270 796 Pfam SNF2-related domain 237 534 IPR000330 GO:0005524|GO:0140658
Alju09g2270 796 Coils Coil 96 119 - -
Alju09g2270 796 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 414 IPR014001 -
Alju09g2270 796 MobiDBLite consensus disorder prediction 162 219 - -
Alju09g2270 796 SMART ultradead3 230 425 IPR014001 -
Alju09g2270 796 PANTHER SNF2/RAD54 HELICASE FAMILY 82 736 - -
Alju09g2270 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 757 IPR027417 -
Alju09g2270 796 FunFam Chromatin complex subunit A 106 474 701 - -
Alju09g2270 796 CDD SF2_C_SNF 546 680 - -
Alju09g2270 796 Gene3D - 470 770 IPR027417 -
Alju09g2270 796 SMART helicmild6 586 670 IPR001650 -
Alju09g2270 796 MobiDBLite consensus disorder prediction 66 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2270 Alju-ChrAlju09 45903163 45910069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2270 220 691 RAD5 or RAD16-like Gene Family AT3G16600 24.570 1.38e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju09g2270 SNF2_N 2.5e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2270 09 45903163 45910069 Alju09g2270 09 45903163 45910069 ECH