Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2249 ATGCCAGTTGATTTAGATAATTCTTCAACAGCTTCAGGGGAAGCTAGCGTCTCTTCCTCTGGCAATCAGACAGCTCCTCCGCCAAAGTCCACTGCTAAGAAGAAGAGAAATCTTCCAGGAATGCCAGATCCAGACGCGGAGGTGATTGCACTGTCTCCGAAGACCCTTTTAGCGACAAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTTCAGAGGGATCAGAATCTTCAACTCCATCGACGGGGTCATAATCTACCATGGAAGCTGAGGCAGAGGTCAAGCAAGGAGGTTAGGAAAAGAGTCTATGTTTGTCCTGAGCCAACCTGCGTTCATCATGATCCCTCTAGAGCTTTGGGTGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACATGGCGAAAAGAAGTGGAAATGTGACAAGTGTTCTAAGAAATATGCGGTTCAGTCAGATTGGAAGGCTCACTCCAAGATTTGTGGCACCAGAGAGTACAAATGCGATTGTGGGACTCTGTTTTCAAGGAGGGATAGCTTCATCACACACAGAGCATTCTGTGATGCGTTGGCAGAGGAGAGTGCAAGAAATCAGCCTCAGCCCCAGACTCCAACCCAGACACAAGCTTCTGAGAAGCCTAATTCAGAATCGAACCCAAAAATTACAAGCGGCGATTCATCCCCTACAGTTCCTGCACCGGCGCCGGCGCCGGCGCCTCCGCCACCACCTAAAGCCCCACCTCCGGCTCATCAGTCGAGTAGCGTCATACCGTCTACCTTGCAGACAAAAAATCCAGAGATGCCCGAAAATCCTTCTCAAATCATAGAGGAACCACAGGTAACTACTGCTTTAAATGGTAGCTGTAGCAGCAGTACAAGCTCAACCAGCAATGGCGGCACCAGTAGTACTGTATTTGCAAGCTTGTTTGCTTCCTCCACTGCTTCTGGAAGCCTTCAACCTCCTCCTCAACCTCAAGCTCCTCCAGCATTCACTGACCTAATACGGGCCATGGCTCCCCCCGATCGTCCCTCAGAGCTCTTGGGGCCTTCATCCTCAGAACCCATTTCTCTCTGCCTCTCCACGAGCAATGGGTCGTCGATCTTTGGAACAGGAGGACAAGAACGTCGCCAGTATGCCCCACCACCACAGCCAGCCATGTCCGCCACGGCGCTACTGCAGAAAGCCGCTCAAATGGGTGCAGCTGCAACAAATGCATCATTGCTTCGCGGGTTTGGTATAGTGTCATCTTCCTCGTCTCCTCCGTCATTGAGCTTGCAAGATAACGTGCCATGGGGTCAGAGGCAAGTAGAACCGGAGAATGCATCTGTTCACGCTGGGCTAGGACTTGGACTCCCATGTGACGGTGGCTCTGGACTGAAGGAATTGATGATGGGGACACCCTCCATGTTCGGTCCAAAGCACACGACCCTCGACTTTCTGGGGTTGGGGATGGCCGCCGGTGGCGCCTCCCCTACTGGAGGCTTATCGGCACTCATCACTTCTATTGGTGGTGGTCTGGATGTTTCAGCCACAGCAACACCATTTGGTAGTGGAGACATTTCAGGTAAAGATATTGGGAGGAGCTCGTGA 1587 0.5142 MPVDLDNSSTASGEASVSSSGNQTAPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARNQPQPQTPTQTQASEKPNSESNPKITSGDSSPTVPAPAPAPAPPPPPKAPPPAHQSSSVIPSTLQTKNPEMPENPSQIIEEPQVTTALNGSCSSSTSSTSNGGTSSTVFASLFASSTASGSLQPPPQPQAPPAFTDLIRAMAPPDRPSELLGPSSSEPISLCLSTSNGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSSPPSLSLQDNVPWGQRQVEPENASVHAGLGLGLPCDGGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGASPTGGLSALITSIGGGLDVSATATPFGSGDISGKDIGRSS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2249 528 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Alju09g2249 528 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 486 IPR031140 -
Alju09g2249 528 FunFam protein indeterminate-domain 12-like 41 109 - -
Alju09g2249 528 Gene3D Classic Zinc Finger 42 108 - -
Alju09g2249 528 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Alju09g2249 528 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Alju09g2249 528 MobiDBLite consensus disorder prediction 194 228 - -
Alju09g2249 528 MobiDBLite consensus disorder prediction 191 270 - -
Alju09g2249 528 MobiDBLite consensus disorder prediction 250 270 - -
Alju09g2249 528 MobiDBLite consensus disorder prediction 280 299 - -
Alju09g2249 528 SMART c2h2final6 103 133 IPR013087 -
Alju09g2249 528 SMART c2h2final6 62 84 IPR013087 -
Alju09g2249 528 SMART c2h2final6 138 158 IPR013087 -
Alju09g2249 528 MobiDBLite consensus disorder prediction 1 45 - -
Alju09g2249 528 Gene3D Classic Zinc Finger 116 196 - -
Alju09g2249 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Alju09g2249 528 MobiDBLite consensus disorder prediction 1 30 - -
Alju09g2249 528 MobiDBLite consensus disorder prediction 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2249 Alju-ChrAlju09 45745120 45747435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2249 1 528 IDZ Gene Family AT5G66730 60.517 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju09g2249 None None None