Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2241 ATGAATCCTCATCCCCTTGATGACCACATGGTGCTTGTCTCTCAGCTATATCATGGAGCTTACTCACAGATAATTCCTCAACAAGGGGAGACAAAGCCGAGACGACGTCGTAAGAAGAACAAGGGAGGAGAAAACGGATCCGACGGTGGAGTGAGGAAGAGGAAGCTGAGTGCAGAGCAAGTGAATCTGTTAGAACTGAACTTTGGGGACGAACATAAATTGGAGTCAGAGCGGAAGGACAGGCTGGCGTCGGAACTGGGTTTGGATCCTCGTCAGGTGGCTGTTTGGTTCCAAAACCGAAGAGCGCGTTGGAAGAACAAGAAGTTAGAGGAAGAGTACTCTAACCTTAAGAAAGTCCACGACTCCACCATTCTCGAGAAATGCCGCCTTGAAACCGAGGTATTGAAGCTGAAGGAGCAGCTTTCAGAAGCAGAGAAAGATATTCAACGACTTCTCGAGCGAGTCGATAGGGTATCAAACAGTAACAGCCCAAGTTCGTCACAGTCCGTTGAAGCTGTGAACCCACCGTTTCTGGGAGATCTTAGGGTTGAGGCTTATGACGATGATGTGTTTTACATGCAATCGACACATTACATCAATGGCATGGATGAGTGGATGTACATGTGA 627 0.4785 MNPHPLDDHMVLVSQLYHGAYSQIIPQQGETKPRRRRKKNKGGENGSDGGVRKRKLSAEQVNLLELNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKVHDSTILEKCRLETEVLKLKEQLSEAEKDIQRLLERVDRVSNSNSPSSSQSVEAVNPPFLGDLRVEAYDDDVFYMQSTHYINGMDEWMYM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2241 208 CDD homeodomain 52 108 IPR001356 GO:0003677
Alju09g2241 208 SMART HOX_1 50 111 IPR001356 GO:0003677
Alju09g2241 208 SUPERFAMILY Homeodomain-like 52 115 IPR009057 -
Alju09g2241 208 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 168 IPR045224 GO:0003700
Alju09g2241 208 FunFam homeobox-leucine zipper protein ATHB-40 46 115 - -
Alju09g2241 208 Coils Coil 99 126 - -
Alju09g2241 208 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
Alju09g2241 208 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Alju09g2241 208 MobiDBLite consensus disorder prediction 23 54 - -
Alju09g2241 208 Coils Coil 134 161 - -
Alju09g2241 208 Gene3D - 43 116 - -
Alju09g2241 208 Pfam Homeodomain 54 106 IPR001356 GO:0003677
Alju09g2241 208 PRINTS Lambda-repressor HTH signature 87 103 IPR000047 GO:0003677
Alju09g2241 208 PRINTS Lambda-repressor HTH signature 78 87 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2241 Alju-ChrAlju09 45678101 45679738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2241 1 208 Homeobox Transcription Factor Family AT4G36740 58.796 1.64e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Alju09g2241 Homeodomain 5.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2241 09 45678101 45679738 Alju12g0093 12 1142520 1144123 CCT
Alju09g2241 09 45678101 45679738 Alju09g2241 09 45678101 45679738 ECH