Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2228 ATGGCCTCTCAAAGCTTCAATTCTACGCTATGTCACTTTGCTTTTGCTGTTGTAATAATCCTTATCATTTTTGCTCCGGCCCTTAGTTCTGCCCAGATGACTGGTTTAAGCACGAACGTGATTGATAAATGTTGGAGAATGAACTCAGAGTGGCGGAGACACCGCTCACAACTTGCAACTTGTTCTGTGGGTTACGCCGGAAAGATGACCAACAACATTGGCAAAGACCTCGTCCACTACAAAGTCACTGACCCTAGTGACGACCCAATAAACCCTAAACCAGGCACATTAAGATATGGAGCTTCCATGATTCAAAGCAAAGTGTGGATCACATTCCAAAGAGACATGCATATTAAGCTTCTCAAGCCCCTTCTCATCAGCAGCTTCACAGCCATTGATGGCCGAGGCGTCAATGTTCATATTTCTCATAATGCATGCTTGATGATCTTCAAGTCGGCCAACATTATAATACATGGCATTCGGATTCATCACTGTAAGGCTCAACCTGCAGGGATGGTGGTGGGCCCAGAAGGGAAGGTAATTCAAGTAGGTCAGGTGGACGGGGATGCGATCAGATTGGTTACAGCCTCCAACGTATGGATTGACCATAATACGTTGTATGATTGTCAAGATGGACTTCTAGATGTTACGAGGGGTTCCACCAACGTGACCATCTCTAACAATTGGTTTAGAGACCAAGACAAGGTTATGCTTCTCGGACACGACGATGGTTACGAGAGGGACAAGGACATGAAGGTCACCGTGGTGTACAACCATTTTGGACCTAACTGCAACCAACGCATGCCTAGGATTAGATATGGGTATGCACATGTAGCCAACAATCTCTACCAAGGATGGATGCAATACGCCATTGGTGGAAGCATGGGACCCAGCCTCAAAAGTGAAGCCAACCTCTTCATAGCACCAACATCTGGAAACAAAGAGGTGACATGGAGAAAAGAGAGCAATGGGTCTATGGGAAAGTGGGAATTCCATTCGGTGGGGGATGTGTTTGAAAATGGAGCTTGCTTCACAGCAACCAAAGGAGGGCGAGTGCCAAAGCCTTATTATAACAGCCAACAGATTTTTAAAGTTGCAGATGCCAAATATGTCAGGGCTTTGACCACATCTTCTGGCGCCTTACGTTGCAGCAAAACCTCCAGATGTTGA 1170 0.4607 MASQSFNSTLCHFAFAVVIILIIFAPALSSAQMTGLSTNVIDKCWRMNSEWRRHRSQLATCSVGYAGKMTNNIGKDLVHYKVTDPSDDPINPKPGTLRYGASMIQSKVWITFQRDMHIKLLKPLLISSFTAIDGRGVNVHISHNACLMIFKSANIIIHGIRIHHCKAQPAGMVVGPEGKVIQVGQVDGDAIRLVTASNVWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFRDQDKVMLLGHDDGYERDKDMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWMQYAIGGSMGPSLKSEANLFIAPTSGNKEVTWRKESNGSMGKWEFHSVGDVFENGACFTATKGGRVPKPYYNSQQIFKVADAKYVRALTTSSGALRCSKTSRC 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2228 389 PANTHER PECTATE LYASE 18-RELATED 36 386 IPR045032 GO:0030570
Alju09g2228 389 Pfam Pectate lyase 131 306 IPR002022 -
Alju09g2228 389 Gene3D - 38 382 IPR012334 -
Alju09g2228 389 SMART amb_all 115 312 IPR002022 -
Alju09g2228 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Alju09g2228 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Alju09g2228 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Alju09g2228 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Alju09g2228 389 PRINTS Pollen allergen Amb family signature 86 111 IPR018082 -
Alju09g2228 389 PRINTS Pollen allergen Amb family signature 329 353 IPR018082 -
Alju09g2228 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Alju09g2228 389 SUPERFAMILY Pectin lyase-like 60 371 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2228 Alju-ChrAlju09 45535554 45537274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2228 69 316 Polysaccharide Lyase AT5G09280 73.387 5.68e-145 411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2228 09 45535554 45537274 Alju09g2228 09 45535554 45537274 ECH