Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2222 ATGGGAATAGCAACTCCACCACCACTTGCAGCAATAATAATCTCTCATCACTCCAAGTCCAAGACCCACCATTCGTTTTTTCCCAATTCTATGTCCATGTCCCAAGATTATCATCAAGCAGGAATCTTCAGCTTCCCGAATGGATTCGAGAGATCCACTGTAACTCAGCAACCTCAGATCCGGAGAGACAAAGTGAGGGTGCAAGGCTTCGACCCACCACCACCGTTGGTAGGTATTGAGGAAGAGGAATCCGGAGGCCTTCCGGCGTACGAAACCGCTGGGATGTTATCGGAGATGTTTAGTTTCCCAACCACCGGCGCCACATCTTCAGAATTATTGGAACAACAACCCTTGACGGCGACGTATCGATCGTTCAGCAGGCCACAGCAGGCTACTGCGATGGGCAGTAGTGAGTGGTACGGAGACCAACAAGGCATGATAAGTGGCTTGGGAGATTCCAAGAATCACCACCGTCCTCATCAGCAGCGTCAGATTTCAAGCATGAATGCGGCGGATTCAGCGGCAGCCATGCAGCTTTTTCTCATGAACCCTCAAACCAGATCGCCTTCTCCTCCTCACAATCCTTCCACTACTTCTTCCACCCTCAACATGTTGCTCCCCAATAATCCTCCCTCTTCTCTCCAAGAATTCCCTGGAACCGGAGGACCTTTTGGTCAATTCACCTGGCTTCCATTTTCTGAAGCAGGTTCTCAAGAAGTTGCAACCAACACCAACCAGAATCCGGGTCAAATCGGAGGTGTTGTGGAAGGCCAAGGTCTTTCTTTATCTTTATCCTCTTCATTAGAAGCAGCAAAAGCCGAGGAACTGAGGATGGGATGCGATGGCGGCTTTCTTAATTATTACGGAGGGTCCTATCCGTACAAGAATTTGGGAGGAGGTCAAGGTCAAACTCATACATTGCATTTACAGGGAGTAGCGCAGAATAACCACCAAGTCCATGGTGGTTTCGGGTCATCGTTAGGGATTGCGAATGTGCTGAGGAACTCCAAGTATGTGAAGCCTGCTAAAGAATTACTTGAAGAATTCTGCAGCATTGGGAGGGGACAGTTCAAGAAGAACAAATTCACCCGCCACAACTCCAACCCTAATTCCAATTCCGGTGGCCCCGCCGCCGCTTCTTCATCTTCTTCAAAAGATCCTCCTCCTTTGTCTGCCACCGACAGGATTGATCATCACAGAAGGAAGGTCAAACTCCTATCCATGCTTGACGAGGTGGACCGAAGATACAGTTACTACTGCGAGCAAATGCAAATGGTGGTGAACTCATTTGACTTGGTGATGGGTTTTGGGGCGGCGGTGCCATACACGGCGTTGGCACAGAAAGCAATGTCAAGACATTTCCGGTGCCTGAAGGAGGCCATATCAGCACAACTGAAACACAGTTGCGAGCTGCTGGGTGAGAAAGATGGCTTGGGTTCGTCGGGTTTGACCAAAGGTGAGACCCCAAGGTTGAAGTTGCTTGAACAAAGCCTGAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAGCAGGAGGCTTGGAGACCCCAGCGAGGCCTTCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAACATTTCCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTCGACAGACTGGCCTATCGAGAAATCAGGTATCAAACTGGTTCATTAACGCGAGGGTAAGGTTGTGGAAACCCATGGTAGAGGACATGTATCAGCAAGAGCTTAAAGAAGCTGATGAGGATGCAGAAGAGAGAGAAATGAACCAAAGTAACAACAGCAACAATAGTGGCAACATGGCACAAACTCCAACGCCAACCACCACCACCACCAATTCTACAGCGTCAGCGCCACCTACAACGCCACCAGCCAAAAGATCCGACGTCGTCAATGCCTCCGAAAGAGACCCCTCATCACTCGTTGCAATCAATAGACAAGCCCTCTCGGAAAACCAAGCAAAGCAACAGTCGTTCGCCGCCGCCTCATCTGAGGTGGCGCCGCCCGTTTCCCAAAGTTTCCGGTCAGACCTGCCTCTGCACGGTCATAATGACACGCGTCGGCATGGCAGCGTGGTTGCAGAAGACTGCGGGACCGCTTCGGCCACTGCTAACAATATTGGATCTACTCTCATTAGGTTCGGGACCACCGCCGGTGATGTGTCTCTCACCCTAGGGCTACGCCACTCCGGCAACATCCCTGACACCTCTCCTTTCTCTGTTAGAGATTTTGGAGGCATTTGA 2268 0.5071 MGIATPPPLAAIIISHHSKSKTHHSFFPNSMSMSQDYHQAGIFSFPNGFERSTVTQQPQIRRDKVRVQGFDPPPPLVGIEEEESGGLPAYETAGMLSEMFSFPTTGATSSELLEQQPLTATYRSFSRPQQATAMGSSEWYGDQQGMISGLGDSKNHHRPHQQRQISSMNAADSAAAMQLFLMNPQTRSPSPPHNPSTTSSTLNMLLPNNPPSSLQEFPGTGGPFGQFTWLPFSEAGSQEVATNTNQNPGQIGGVVEGQGLSLSLSSSLEAAKAEELRMGCDGGFLNYYGGSYPYKNLGGGQGQTHTLHLQGVAQNNHQVHGGFGSSLGIANVLRNSKYVKPAKELLEEFCSIGRGQFKKNKFTRHNSNPNSNSGGPAAASSSSSKDPPPLSATDRIDHHRRKVKLLSMLDEVDRRYSYYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKEAISAQLKHSCELLGEKDGLGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEADEDAEEREMNQSNNSNNSGNMAQTPTPTTTTTNSTASAPPTTPPAKRSDVVNASERDPSSLVAINRQALSENQAKQQSFAAASSEVAPPVSQSFRSDLPLHGHNDTRRHGSVVAEDCGTASATANNIGSTLIRFGTTAGDVSLTLGLRHSGNIPDTSPFSVRDFGGI 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2222 755 SMART prehox3 327 463 IPR006563 -
Alju09g2222 755 Pfam Homeobox KN domain 532 571 IPR008422 GO:0003677|GO:0006355
Alju09g2222 755 CDD homeodomain 515 576 IPR001356 GO:0003677
Alju09g2222 755 MobiDBLite consensus disorder prediction 598 630 - -
Alju09g2222 755 MobiDBLite consensus disorder prediction 184 216 - -
Alju09g2222 755 ProSiteProfiles 'Homeobox' domain profile. 512 575 IPR001356 GO:0003677
Alju09g2222 755 SMART HOX_1 515 579 IPR001356 GO:0003677
Alju09g2222 755 MobiDBLite consensus disorder prediction 184 220 - -
Alju09g2222 755 MobiDBLite consensus disorder prediction 362 389 - -
Alju09g2222 755 MobiDBLite consensus disorder prediction 662 698 - -
Alju09g2222 755 MobiDBLite consensus disorder prediction 587 646 - -
Alju09g2222 755 Pfam Associated with HOX 332 462 IPR006563 -
Alju09g2222 755 Coils Coil 578 598 - -
Alju09g2222 755 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 175 602 - -
Alju09g2222 755 SUPERFAMILY Homeodomain-like 517 582 IPR009057 -
Alju09g2222 755 FunFam BEL1-like homeodomain protein 4 518 580 - -
Alju09g2222 755 MobiDBLite consensus disorder prediction 360 397 - -
Alju09g2222 755 Gene3D - 518 580 - -
Alju09g2222 755 MobiDBLite consensus disorder prediction 662 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2222 Alju-ChrAlju09 45482546 45488056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2222 327 753 Homeobox Transcription Factor Family AT2G23760 52.263 2.78e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Alju09g2222 POX 9.7e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2222 09 45482546 45488056 Alju12g0120 12 1485261 1493227 CCT
Alju09g2222 09 45482546 45488056 Alju09g2222 09 45482546 45488056 ECH
Alju12g0120 12 1485261 1493227 Alju09g2222 09 45482546 45488056 ECH