Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2124 ATGTCTCTCTTGGACGTGGACATGAACAAATCTTCAGGGTGTGAAAGTGGTGGTATGGACATGATCTCCATGATGATGCAAATGGAGAAGTTTTCTGCTGATCAGTTCTGTGATCCTTTCTTTAACAATCCCACTGATTGCCCTGAAGCTACTGACTCTGCTAATATTGCCGCCACATTCCTCGACCCTAACGAGGCTCCTGATTTTGTCAACACTAGCCCAATTATTCAACAACCCATGGCACCACCGCCATCATTTCTTCATCATCAACCTCAGTCGGTGGACGATGTTCCTCCGACGAGGCCCAGGAATAAATATAATCCGAACAACTCATCATATACAAATTACGCGTGTGGTTCAGAGAAGAGGAATTCAATGGCGGCGATGAGAGAGATGATATTCAGGATAGCGGTGATGCAGCCAATTCATATAGACCCAGAATCGGTGAAGCCACCGAAGAGGAGGAATGTGAAGATATCGAAGGACCCACAGAGCGTGGCGGCGAGGCACAGAAGGGAGAGGATAAGCGAGAGGATAAGGATTCTGCAGAGATTAGTGCCGGGAGGGACCAAAATGGACACGGCTTCTATGTTAGACGAAGCCATACATTACGTCAAGTTCTTAAAGAAACAAGTGCAGACTCTGGAGCAGGCAGGGGCTAGTAGTACTAGTAGGCCCATATGCGTTCCTTTTTCTGGCACCTCATCAAGTACTGTCAACGTCAATTATTCTGATTTCATGGTTAAGGGTCGCCAATTACCAGCAGCTCCTCCAATGGTGGGTTCTATGCACATGCTATGA 801 0.4707 MSLLDVDMNKSSGCESGGMDMISMMMQMEKFSADQFCDPFFNNPTDCPEATDSANIAATFLDPNEAPDFVNTSPIIQQPMAPPPSFLHHQPQSVDDVPPTRPRNKYNPNNSSYTNYACGSEKRNSMAAMREMIFRIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASSTSRPICVPFSGTSSSTVNVNYSDFMVKGRQLPAAPPMVGSMHML 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2124 266 FunFam BHLH transcription factor 162 225 - -
Alju09g2124 266 CDD bHLH_AtIND_like 160 216 - -
Alju09g2124 266 Pfam Helix-loop-helix DNA-binding domain 169 208 IPR011598 GO:0046983
Alju09g2124 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Alju09g2124 266 MobiDBLite consensus disorder prediction 103 118 - -
Alju09g2124 266 Coils Coil 198 218 - -
Alju09g2124 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 218 IPR036638 GO:0046983
Alju09g2124 266 Gene3D - 158 225 IPR036638 GO:0046983
Alju09g2124 266 MobiDBLite consensus disorder prediction 76 118 - -
Alju09g2124 266 SMART finulus 165 214 IPR011598 GO:0046983
Alju09g2124 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 18 235 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2124 Alju-ChrAlju09 44772694 44773494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2124 105 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 81.579 5.92e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g2124 HLH 1.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2124 09 44772694 44773494 Alju09g2124 09 44772694 44773494 ECH