Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2117 ATGCCCATGCTTATGGTCTCCATATCCAAATTGTTCTCCCAGCATCAGATCACAGCGACGGAAATGGCCGATGAACAGCCTTCAACGACTTCCAAACGAAAGGGAAGAGGAGCCGAGGCATTGGCGCGTTCCGAAGCTTTGGAACGTCTAAAAGCTCGTCTTCGTGGCGGTCGCCGTTCAGATGGCGATGGATATCAAATTAAGTTAGATAACCCTATTTATGACACTGTCGAAGAGGACGAGTACAATGCTCTAGTCGCCAAGCGCCGTGAAGAAGCCCGAGGCTTCATTGTGGACGATGACGGTCTTGGGTACGGGGACGAAGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTCACCCTGTCCTCCGACGAATCCGATGGCGAAACAGAAAAGCCCAAAAGGAAGAGACAGGGAAAGAAAGATCCTCAACCTAAAAGGCCACCGTCTTCGCTATCGGCTGCGGCAGCGATGATAGGGGCGCAGAGGTTGTCATCGATGTTCACTTCGTCAGTTTTTAAGAAAACCCGGGATGATAAGGCTAAAGGCTTTCCTTGTGATAGCATTGTTGATGATGTTATAGCAGAGTTTGCACCGGATGAGACTGATAGACTAAGGCGCAGACGCGGGACAACAGATCCTTCATCAAGGGCGAACATTGCTCTTCCGATTAATAATGTTAAGAGCGAGGAACCAGCGATTGGATGTCTTGATCCGATGGGAGGTCCTTTGTCGTCGGATGCTGCCGCAAATGGCGATTATGAATCTACCAAAGTTGTGAAAAATGATGGTTATGCCTTGGTTTCTGAACAAAACCACGGAGGAGTCAAAGTAGAGGCAACCACTAAAGAGTCAGAAGATGGGAGAAATATTAATTTCGACGATGGTCTGGCAACAGTCTTGCAAACTCATAGTGGTACAACTAACGGAGACGTGACTGAAGAGAAAATGTTAAAGGACTTTGAGATGAAAGCTAAAAATACAGTGGAGAAGGAGGTATTTCATCTGAATGCGAAAGTTAAAGAAGACGACCCTGCACTGAGTGCGACTATCGGTTGGCAGGCAGCAAAGAGCGGGGGCGACGTCAATGTTGCTGATTCAAAGGTGGTGGACGAAGCTTTAAATAGCGAAGAAAACTTAGAGTTCAATCTGGAGGCTGATGGGTCGCTGCCTTTCTACATACTTGATGCCCATGAGGAATTCTATGGAGCTAACATGGGTACCCTTTATTTGTTTGGGAAGGTCAAATCAGGTAATTCATATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGATGTGTCTATGCAATTCCAAGTCGTCCCTTACATCACACTGATGAGATGATGGAACTTGAGAAGGATATTGAAGAGTCCCGGATTTCTCGTACAGACTTCCATAAAAAGCTGCAAGATATGGTGTCTGGTTTAAAGAGTGAGATAGCAAAACAGCTGTTAGATCTGAACGCTTCAACTTTTAGCATGAAACCTGTTAAGAGGAAATATGCATTTAAACGCTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATCAACTATCCATTCAAGGATCCACCTCTTCCAGTAGATCTGAAAGGAGAGAGTTTCTGTGCTGTTCTAGGAACTCATTGCAGTGCGTTGGAGCTTTTTCTAATTAAAAGAAAGATAAAGGGGCCTTCATGGCTGCTACTTTCAAACTTTTCTTCCCGCCTTACTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTGTCCTAAAGACATAAGGATTTCAACTTCCTCCAAATCCAGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAACAAAACTTAAACGAGATCGTCTCTGCATCCATTGTTTGCTGCCGCAGGGTCAAGATTGACACTCCCATGTTGGCTTCAGAATGGAAGAGACCTGGACTACTGGCCCATTTTACTGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTCAATAAGGAAGTTACAGACCGAAACACAAAAGCTGGATCAAATGTTCTGTGTGTTGAGAGCAGTGAAAGGGCTTTACTAAACCGCCTGATGATAGAATTACACAAGTTGGACAGTGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCCAAAGTGCCAAGCAGCATGTGGTCCAAAACAGGCCGCCTTAAACGGTCTGTGATGCCTAAACTTACCAGAGTAAGCACTGTTTTTGGTTCTGGAGCTACTCCTGGCATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTATTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAATCTCAGCTGAATAAAGTTCGAAAGGAAGTTGCTCCACATGATGTTTCAAAAATGTTCCAATCAGCAGAATCCCTTATGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAGCTGACTAATATTAGTGGTAATTTGTGGGGGAAAACACTTCAGGGTGCAAGGGCACAGAGAGTGGAGTATCTTCTGTTGCATGCATTCCATGCAAAGAAATATATTGTGCCAGACAAGATTCCTCCCCATGCCAAAGAAACAAAATTGACGAAACGCAGAGGAATGCATGGTGTTGAGGATGTCAGCTTTGACGAATTAACTGACAATACAAACTATGACAATGATGCTCCTGACAATGATCATGGGAAAAGCAAGAAGACCCCGTCCTATGCTGGAGGGCTGGTCTTGGAGCCTAAAAGAGGTTTATATGACAAATATATATTGCTCTTGGACTTCAATAGTCTTTATCCTTCTATAATCCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGGATCTTTTCCTCGTCTGCCATCTAGTAAAACAACTGGAGTTTTGCCAGAGTTGCTGAAAAATTTGGTTCAAAGGAGGAGAATGGTGAAGTCATGGATGAAAACTGCTTCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAACAAGCACTTAAGCTTACCGCAAACAGTATGTACGGATGCTTGGGATTTGCTAATTCAAGATTTTATGCAAAACCGTTGGCCGAGCTTATAACCTTGCAAGGAAGGGAGATATTACAAAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTGGAGGTGATTTATGGGGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAAGCAAAAGCAATGGCTGGAAAAGTGATTCAAGAGGTCAACAAGAAATATAGGTGCTTGGAAATTGACCTTGATGGTTTGTACAAGAGAATGCTACTGCTGAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCTCGCCATATGAGGTTATTGAACGTAAGGGTCTGGACATTGTTCGTCGTGACTGGAGTCTATTATCTAAAGAAATAGGAGATTTTTGCCTAGGCCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTCGTAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCACGTTCTTGTGGCACAAAGGTTGAAGCAAAAGGGCTACTCCACTGGTTGCTCTGTTGGTGATGCAATCCCCTACATTATTTGCTATGAGCAGGGCAGTAATTCAAGCGGCGGAACAAGTATTGCTCAACGTGCTAGACATCCTGAGGAACTAAAACAAGAACAAGGGAAATGGATGATTGACATTGATTATTACCTATCACAACAGCTTCATCCTGTTGTATCACGGCTCTGTGCATCAATTCAGGGCACGAGTCCAGAAAGGCTGGCTGATTGTTTAGGGCTTGATGCATCAAAATTTCAACACAAGTCAAGTGAAGCCTTCAATGGTGATCCTTCAAATTCACTCTTGTTTGCTGCTGATGACAAAGAGAGGTATCAAGGTTGTGAGCCGTTGGTTTTATCATGTCCTAGCTGCTCTGGTACCTTTGACTGTCCTCCCATCTTTAAATCTGTTTGTGAAAGTGAAAAGCCAACAAGCTCAGGCATGGAGGAATCAAGTTATAATTTCTGGCGTAAGCTGCGCTGTCCTAAGTGCCCGGAAGAAGATGGTGTTGGCAGAATTTTTCCTGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGATAAGTTTATTTCAATGTACTACAGAGGCTTGTTAATGTGTGACGATGAAACTTGTAAGTATTCAACACGAAGTATCAACCTTCGGCTGGTTGGTGATTCTGAAAGAGGAACTGTTTGTCCAAACTACCCTCGCTGCAATGGGCGTCTTCTAAGACAGTACACGGAGGCAAACTTGTATAAACAGCTCTCGTATTTTTGCCATGTGTTGGATACTGTTTCCTGTATAGAAAAGATGGAGGTTAAATCTAGGATACCACTTGAGAAAGAGTTGTCGAAAATTAGGCCAATGGTTGATCTGGCAGCGTCAACGATACGGAAGATTCGGGATCGGTGTGCCTTTGGGTGGGTACAAATGCAGGACTTGGTCATCACTGTATGA 4722 0.4346 MPMLMVSISKLFSQHQITATEMADEQPSTTSKRKGRGAEALARSEALERLKARLRGGRRSDGDGYQIKLDNPIYDTVEEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGETEKPKRKRQGKKDPQPKRPPSSLSAAAAMIGAQRLSSMFTSSVFKKTRDDKAKGFPCDSIVDDVIAEFAPDETDRLRRRRGTTDPSSRANIALPINNVKSEEPAIGCLDPMGGPLSSDAAANGDYESTKVVKNDGYALVSEQNHGGVKVEATTKESEDGRNINFDDGLATVLQTHSGTTNGDVTEEKMLKDFEMKAKNTVEKEVFHLNAKVKEDDPALSATIGWQAAKSGGDVNVADSKVVDEALNSEENLEFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKSGNSYQSCCVVVKNMQRCVYAIPSRPLHHTDEMMELEKDIEESRISRTDFHKKLQDMVSGLKSEIAKQLLDLNASTFSMKPVKRKYAFKRSEIPAGENYVLKINYPFKDPPLPVDLKGESFCAVLGTHCSALELFLIKRKIKGPSWLLLSNFSSRLTSQRVSWCKFEVTVDCPKDIRISTSSKSSFEIPPVVVTAINLKTIINEKQNLNEIVSASIVCCRRVKIDTPMLASEWKRPGLLAHFTVVRKLDGGIFPLGFNKEVTDRNTKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKTGRLKRSVMPKLTRVSTVFGSGATPGIMSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKSQLNKVRKEVAPHDVSKMFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPPHAKETKLTKRRGMHGVEDVSFDELTDNTNYDNDAPDNDHGKSKKTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTTGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGSPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLRKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDAIPYIICYEQGSNSSGGTSIAQRARHPEELKQEQGKWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKFQHKSSEAFNGDPSNSLLFAADDKERYQGCEPLVLSCPSCSGTFDCPPIFKSVCESEKPTSSGMEESSYNFWRKLRCPKCPEEDGVGRIFPAMIANQVKRQADKFISMYYRGLLMCDDETCKYSTRSINLRLVGDSERGTVCPNYPRCNGRLLRQYTEANLYKQLSYFCHVLDTVSCIEKMEVKSRIPLEKELSKIRPMVDLAASTIRKIRDRCAFGWVQMQDLVITV 1573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2117 1573 Gene3D - 392 591 - -
Alju09g2117 1573 Gene3D Palm domain of DNA polymerase 932 1156 IPR023211 -
Alju09g2117 1573 CDD DNA_polB_alpha_exo 605 856 - -
Alju09g2117 1573 SMART polmehr3 605 1106 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju09g2117 1573 Pfam DNA polymerase family B 864 1326 IPR006134 GO:0000166|GO:0003677
Alju09g2117 1573 Gene3D DNA Polymerase alpha, zinc finger 1365 1558 IPR038256 -
Alju09g2117 1573 SUPERFAMILY Ribonuclease H-like 387 893 IPR012337 -
Alju09g2117 1573 MobiDBLite consensus disorder prediction 922 946 - -
Alju09g2117 1573 FunFam DNA polymerase 1170 1356 - -
Alju09g2117 1573 FunFam DNA polymerase 605 918 - -
Alju09g2117 1573 MobiDBLite consensus disorder prediction 99 153 - -
Alju09g2117 1573 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 39 1571 - -
Alju09g2117 1573 Pfam DNA polymerase alpha subunit p180 N terminal 47 114 IPR024647 -
Alju09g2117 1573 CDD POLBc_alpha 939 1342 IPR045846 GO:0003887|GO:1902975
Alju09g2117 1573 SUPERFAMILY DNA/RNA polymerases 889 1341 IPR043502 -
Alju09g2117 1573 Gene3D - 432 558 - -
Alju09g2117 1573 FunFam DNA polymerase 432 558 - -
Alju09g2117 1573 Gene3D Helix hairpin bin 1002 1053 - -
Alju09g2117 1573 NCBIfam DNA polymerase (pol2) 72 1324 - -
Alju09g2117 1573 PRINTS DNA-directed DNA-polymerase family B signature 963 976 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju09g2117 1573 PRINTS DNA-directed DNA-polymerase family B signature 1092 1100 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju09g2117 1573 PRINTS DNA-directed DNA-polymerase family B signature 1039 1051 IPR006172 GO:0000166|GO:0003676|GO:0003887
Alju09g2117 1573 Gene3D - 605 916 IPR036397 GO:0003676
Alju09g2117 1573 Gene3D - 1170 1355 IPR042087 -
Alju09g2117 1573 MobiDBLite consensus disorder prediction 27 44 - -
Alju09g2117 1573 FunFam DNA polymerase 1365 1559 - -
Alju09g2117 1573 MobiDBLite consensus disorder prediction 20 44 - -
Alju09g2117 1573 Pfam DNA polymerase family B, exonuclease domain 421 799 IPR006133 -
Alju09g2117 1573 FunFam DNA polymerase 1004 1053 - -
Alju09g2117 1573 Pfam DNA Polymerase alpha zinc finger 1366 1569 IPR015088 GO:0003887|GO:0006260
Alju09g2117 1573 ProSitePatterns DNA polymerase family B signature. 1094 1102 IPR017964 GO:0000166|GO:0003676
Alju09g2117 1573 Coils Coil 1120 1140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2117 Alju-ChrAlju09 44716235 44728906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2117 22 1571 Core DNA Replication Machinery Family AT5G67100 60.920 0.0 1872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2117 09 44716235 44728906 Alju09g2117 09 44716235 44728906 ECH