Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2100 ATGAACATTCACTCTCTGTCCCTGCCTTTTGATCAGTCTCGCCGAGAAAGAGGGACGGACGGCGGCGAAGCAGCGGAGAGAGAGATGCCGACCAGGAAAAGAGGGGCCGTTCAACTTGAAGGAGAGAGAAGATACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAGATTCGAGAGCCCAATAAACGCTCTAGGATTTGGCTCGGTTCCTACTCCACTCCCGTCGCCGCGGCCCGGGCCTATGACACCGCCGTTTTCTGTCTCAGGGGCCCATCGGCCCGCCTTAATTTCCCTGACCTCTTAGAAGGCGGCGTCGTTGGCGGCTGCGACTGCGACATGTCGGCGGCTTCGATTAGGAAGAAAGCGACGGAGGTCGGTGCCAGAGTCGACGCGATTCAGGCCGCTCTCCACCATCACCACCATGCCTCCGTGGCGCCGGAGATCATCTCACGCAGCGCAGGCGCCGGAGCCGGCTCCGGGGAGTTTTTGGCGCGGGTTGATCTTAACAAGATACCAGAACCCGAGGATTCGGACTGCGACTGCGACTGCGAGTGA 564 0.5993 MNIHSLSLPFDQSRRERGTDGGEAAEREMPTRKRGAVQLEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFCLRGPSARLNFPDLLEGGVVGGCDCDMSAASIRKKATEVGARVDAIQAALHHHHHASVAPEIISRSAGAGAGSGEFLARVDLNKIPEPEDSDCDCDCE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2100 187 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Alju09g2100 187 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Alju09g2100 187 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Alju09g2100 187 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Alju09g2100 187 CDD AP2 44 103 IPR001471 GO:0003700|GO:0006355
Alju09g2100 187 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Alju09g2100 187 MobiDBLite consensus disorder prediction 10 35 - -
Alju09g2100 187 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Alju09g2100 187 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Alju09g2100 187 MobiDBLite consensus disorder prediction 1 35 - -
Alju09g2100 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 33 181 - -
Alju09g2100 187 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2100 Alju-ChrAlju09 44579985 44580548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2100 20 187 AP2-EREBP Transcription Factor Family AT5G67190 53.403 6.52e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju09g2100 AP2 9.5e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2100 09 44579985 44580548 Alju12g0212 12 2634048 2634518 CCT
Alju09g2100 09 44579985 44580548 Alju09g2100 09 44579985 44580548 ECH