Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2037 ATGATATATGCGCATGAACCAGCCATACTCCTCCGTTTATCGCTAGTTTGCGCCCTCGTCGCGTTGCGTGCGCCGGTTGCGCACCCTCCTAACGTGCACATCCTCTCCTTCCCCATCCATACTATCGCCGCCACCCCCCCTACCATCATCCACCTGTGCAACAAGCTCAATTACCATAAGGGCGAGATCTCGGATTGTTGCCGAGCCATGTCTAAGGCGCGCGTCTATGCGGATGTCAATGTCCTTCGCCCCAAGGAGTATTGGGATTACGAATCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTAGGAAGGGGAAAGTATAGTGAGGTGTTTGAAGGCATCAATGTTAATAGCAATGAGCGCTGCATAATTAAGATTCTGAAGCCAGTCAAAAAGAAGAAGATCAAAAGAGAGATTAAAATACTCCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAGCACTCAAAAACCCCCAGCTTAATATTTGAGTACGTCAACAGTACAGATTTTAAAGTTCTGTATCCAACCTTGACTGATTATGACATACGCTATTACATCTATGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCACAATGTCATGATAGATCATGAATTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTCTATCATCCTGGAAAGGAATACAATGTTCGCGTGGCTTCAAGATATTTCAAGGGTCCTGAACTTTTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTCCGCAAGGAACCATTCTTTTATGGGCATGACAACCATGATCAACTTGTGAAAATAGCTAAGGTGCTTGGAACTGATGAATTGAATGCTTATCTGAATAAGTATCATCTAGAGCTGGATCCTCAACTCGATGCACTTGTTGGAAGGCACAGTCGGAAACCCTGGTCTAAATTTATTAATGCGGATAATCAGCATCTTGTGTCTCCAGAGGCAATCGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACAGGCTTACTGCAAGAGAAGCTATGGCACATCCGTATTTCTCTCAGGTAAGGGCTGCAGAAAGTAGCAGAATGAGGACACAATGA 1209 0.4392 MIYAHEPAILLRLSLVCALVALRAPVAHPPNVHILSFPIHTIAATPPTIIHLCNKLNYHKGEISDCCRAMSKARVYADVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2037 402 SUPERFAMILY Protein kinase-like (PK-like) 76 392 IPR011009 -
Alju09g2037 402 PANTHER CASEIN KINASE II SUBUNIT ALPHA 67 398 IPR045216 GO:0004674|GO:0006468
Alju09g2037 402 FunFam Casein kinase II subunit alpha 180 391 - -
Alju09g2037 402 Pfam Protein kinase domain 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju09g2037 402 Gene3D Phosphorylase Kinase; domain 1 103 179 - -
Alju09g2037 402 Gene3D Transferase(Phosphotransferase) domain 1 180 388 - -
Alju09g2037 402 SMART serkin_6 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju09g2037 402 ProSiteProfiles Protein kinase domain profile. 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju09g2037 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Alju09g2037 402 CDD STKc_CK2_alpha 84 388 IPR045216 GO:0004674|GO:0006468
Alju09g2037 402 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Alju09g2037 402 FunFam Casein kinase II subunit alpha 89 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2037 Alju-ChrAlju09 44103675 44108433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2037 101 388 Core Cell Cycle Gene Families AT1G76540 29.450 1.46e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Alju09g2037 Pkinase 1.3e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2037 09 44103675 44108433 Alju12g0263 12 3295736 3304043 CCT
Alju09g2037 09 44103675 44108433 Alju09g2037 09 44103675 44108433 ECH