Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2000 ATGGGTGCTCCAAAGCAAAAATGGACTGCTGAAGAAGAAGCGGCACTGAAAGCTGGAGTAATCAAACATGGGGCAGGAAAGTGGCGCACTATACTTACAGACCCAGAGTTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTAAAGGATAAATGGAGGAATATAAATGTGACTGCAATATGGGGATCCAGACAGAAGGCGAAACTTGCACTTAAGAAGAACCTACCGACCCCCAAAAATGATAACAACCATTTGGCATTGAGTACTGTTGTTCAACATGGTGAAGAAGTTCTTGATACCAAGCCTCTAGCAGTTGCTGGCAGACTGTCACAGCCTGCTAACCCAAAAGAACAAATATCTAGGTTGGATAGTTTTATATTAGAGGCCATTATCAATTTGAAGGAGCCAAAGGGTACTGACAGGGCTGCTATTGCTGCTTACATAGAGGAGCATTATTGTTCTCCACCAAACCTCAGAAAGTTATTGTCAACGAAACTGAAGCATATGGTGGCTAGTGGCAAATTGACCAAGGTAAAACACAAGTACAGGATCACTCCAAGTTCTGCAATCTCTGAGAAAAGAAGACACTCTAACTTGTTACTCCTGGAAGGGAGGCCCAGAGATTCTCCAAAAGCGGAGAAGACCAATGTCAACATACTTTTAAAATCCCAGATTGACGCAGAGCTATCAAAAATGAAGGGTGTGACAGCCCAAGAAGCTGCTGCAGCTGCGGCAAAGGCAGTTGCTGAAGCAGAAGCGGCAATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCTGAAGCAGAGGCCGCACAAGTGTTTGCAAAAGCAGCAATGAAAGCACTTAAATGCAGAACACTGCAAATTTGATGGTGTGAACTTCAGGCAGCATCGTCACCAGCTATCCTCCATTACCTCTCCTGCCTGTATTTTGTGACTGTACATCTTATTACAAAATACAGGCATGTAAATTCGCAATATGCGGGATTGATGGATGAAACATATTTAGACTTTTTAGGTCGTTATAAACTTTAG 1050 0.439 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPTPKNDNNHLALSTVVQHGEEVLDTKPLAVAGRLSQPANPKEQISRLDSFILEAIINLKEPKGTDRAAIAAYIEEHYCSPPNLRKLLSTKLKHMVASGKLTKVKHKYRITPSSAISEKRRHSNLLLLEGRPRDSPKAEKTNVNILLKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKCRTLQIXWCELQAASSPAILHYLSCLYFVTVHLITKYRHVNSQYAGLMDETYLDFLGRYKL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2000 349 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Alju09g2000 349 Coils Coil 242 279 - -
Alju09g2000 349 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Alju09g2000 349 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju09g2000 349 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Alju09g2000 349 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju09g2000 349 CDD SANT_TRF 6 57 - -
Alju09g2000 349 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju09g2000 349 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
Alju09g2000 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Alju09g2000 349 Gene3D - 117 197 IPR036388 -
Alju09g2000 349 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Alju09g2000 349 FunFam Telomere repeat-binding factor 1 2 58 - -
Alju09g2000 349 Gene3D - 2 59 - -
Alju09g2000 349 SMART sant 4 59 IPR001005 -
Alju09g2000 349 CDD H15 127 196 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2000 Alju-ChrAlju09 43779755 43783236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g2000 1 296 Single Myb Histone (SMH) Gene Family AT5G67580 56.187 7.93e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju09g2000 Linker_histone 1.1e-11 CL0123