Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1972 ATGAAGACCGTGGAGAATGATGAAAACAACTGGCTGGGTTTCTCTCTCTCCCCCCACATGAATCTAGATGTTCCTTCTGACTGTAATGACCAACAACACCAACAACAGGACACACCAGTGACACGGCCTTCCTCTGCCGCTGCAGATACAGTTCCGGCAAGCTTTTATCACTCCATGCCTCTTCCTCCTAATTATGGCATTTACTATGGTGGTGGCCTTGAAGCTGAAAATGTCGGCTTCTATTCTTCCCTTCCTGTCATGCCCCTAAAATCGGACGGCTCTCTCTATCTAATGCACTCACAACCTCAAGCAATGGTATCGACTTCAGCCCCAAAACTGGAGAATTTCTTAGGCAGCTCAACAATGGGTACCTTGAGCTTAGACAGCATGATTTTTGGCAACCAATCCTCACGACGAGAACTCAACAACACAAACTATCTGAACAACCGTGTAGAACAGGGGCAAGACATTCAGGCTCAGCCTTTCGCATCATACTATTCTGGCTTCAGGAGTCATGAAATGATTTTAGAAGGGGCCAAGCAAAATGTTGCTTCAGAGTGTAGTGTCCAAGTCCCAAGTAGGGCAGAGGAGGGAGTTTCTGGAATGAAGGGCTGGGGCATGAGAATCAACCAAGCTGGCCATGCACCGGAGCCGGAGATGATGGTGAACGTTGAGGATAACAATGGCGGCGAATCTGGGTCCATTGGATCAATGGCGTATGGCGATTTGCAGTCACTGAGTTTGTCCATGAGCTCTGGCTCACAGTCAAGCAGTGTCACAAGTTCACAGAGAGCTTCGCCTTCTTTCATTGACTCTGTTGGCGTGGATACAAAGAAAAGAGGACCTGAAAAGTTTGACCAGAAGCAAATTATCCACCGGAAATCCATAGATACCTTTGGCCAAAGAACCTCCCAATATAGAGGTGTAACAAGACATAGATGGACTGGTAGATACGAAGCACATCTTTGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATCAATTTCCCATTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACAAGACAGGAATACGTTGCTCATTTGCGGAGGAAAAGCAGCGGATTCTCCAGAGGTGCTTCCATGTACCGAGGAGTAACAAGACATCATCAACATGGGCGGTGGCAAGCTCGAATCGGCAGAGTGGCTGGAAACAAGGATCTATATCTTGGAACATTCAGTACCCAAGAGGAAGCAGCTGAGGCATATGACATAGCAGCCATAAAGTTCCGTGGAGTAAACGCGGTGACCAACTTTGACATAACGAGATATGATGTGGACAAAATCATGGCCAGCAGTAACCTTCTTAGCGGTGAGCTAGCCAGGCGAAACAAAGAGAGCGATGCCGGTAACGATCGGGCCATCATTCCTATAGGTGCTGCATATGTTGAAAACCAACAGGGTGCGATTTCAATGCGCAAGAGCTTCGATGGCCAGTCATCATCAGAGTGGAAGTTGGGAACGCATATCTTAGATCGTTCTCTATGGATGACAGAAGTTAGCCAAAATCCAGCTGCAAGAATTGAGACTTATAGAACTCAGTCCTACTCAATGCCTTCTTTAGATGACTTGATCCATCAAGTAGATGAGTCAACCAAGATGGGAACACACGTCTCAAATCATTCGTCATTAGTAACAAGTTTGAGCAGCTCAAGAGAAGTTAGTCCTGATAAAACAAGCCTGCCAATTCTCACTGAGACGCCTTCGTTGGTGACAAGCTTGAGGCCTCCACTTTCATTGCCTCATGTGCCAGTTTTTGCTGCTTGGACAGATGCTTGA 1914 0.4645 MKTVENDENNWLGFSLSPHMNLDVPSDCNDQQHQQQDTPVTRPSSAAADTVPASFYHSMPLPPNYGIYYGGGLEAENVGFYSSLPVMPLKSDGSLYLMHSQPQAMVSTSAPKLENFLGSSTMGTLSLDSMIFGNQSSRRELNNTNYLNNRVEQGQDIQAQPFASYYSGFRSHEMILEGAKQNVASECSVQVPSRAEEGVSGMKGWGMRINQAGHAPEPEMMVNVEDNNGGESGSIGSMAYGDLQSLSLSMSSGSQSSSVTSSQRASPSFIDSVGVDTKKRGPEKFDQKQIIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVDKIMASSNLLSGELARRNKESDAGNDRAIIPIGAAYVENQQGAISMRKSFDGQSSSEWKLGTHILDRSLWMTEVSQNPAARIETYRTQSYSMPSLDDLIHQVDESTKMGTHVSNHSSLVTSLSSSREVSPDKTSLPILTETPSLVTSLRPPLSLPHVPVFAAWTDA 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1972 637 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 PRINTS Ethylene responsive element binding protein signature 447 467 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 SMART rav1_2 407 471 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 SMART rav1_2 305 377 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 FunFam AP2-like ethylene-responsive transcription factor 406 467 - -
Alju09g1972 637 Pfam AP2 domain 408 457 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 Pfam AP2 domain 305 363 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 FunFam AP2-like ethylene-responsive transcription factor ANT 304 373 - -
Alju09g1972 637 SUPERFAMILY DNA-binding domain 406 466 IPR016177 GO:0003677
Alju09g1972 637 MobiDBLite consensus disorder prediction 22 48 - -
Alju09g1972 637 SUPERFAMILY DNA-binding domain 304 373 IPR016177 GO:0003677
Alju09g1972 637 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 497 - -
Alju09g1972 637 CDD AP2 304 371 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 CDD AP2 406 467 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 Gene3D AP2/ERF domain 407 467 IPR036955 GO:0003700|GO:0006355
Alju09g1972 637 Gene3D AP2/ERF domain 304 373 IPR036955 GO:0003700|GO:0006355
Alju09g1972 637 ProSiteProfiles AP2/ERF domain profile. 305 371 IPR001471 GO:0003700|GO:0006355
Alju09g1972 637 Coils Coil 372 392 - -
Alju09g1972 637 ProSiteProfiles AP2/ERF domain profile. 407 465 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1972 Alju-ChrAlju09 43529312 43532621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1972 233 492 AP2-EREBP Transcription Factor Family AT4G37750 75.000 1.37e-142 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju09g1972 AP2 1.2e-13 CL0081