Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1969 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTGAAGAAAGGCCCATGGTCCCCTGAGGAAGACGCCAAGCTCAAGGTCTATATTGAGCACAACGGCACCGGCGGCAACTGGATTGCCTTGCCCCAAAAGATAGGGCTTAAGAGATGCGGGAAAAGCTGTCGCCTAAGATGGTTGAATTATCTTCGGCCAAACATAAAGCATGGGGGTTTCTCCGAGGAAGAAGACAACATAATCTGCAGCCTCTATGCCACTATTGGAAGCAGGTGGTCAATAATAGCATCACAATTACCGGGGAGAACAGATAATGATATAAAGAACTACTGGAACACCAGGTTGAGGAAGAAGCTTCTGGGTAAGCAGCGCAAGGAACAACAGGCCCATGCTCGCCCAAAGCCACTCATGATGAAGAACCAAACTGAACATTTGGTGACACCTTTGACCCAAAATCCCACCTGGCCTGCCCAACAATATCATGATCCCAACCATGGAAACTTGCCAAATAAAGTAGAACACCAACAACCATACTCACACACACTTTCATCCCATACCATAAATTCCGACTACCAACTTCTCCATCTAGAACAGCAGCCATACTCGGCCTCAATTAATTCAGCAACAGCACCGCTAGTGAATAATAGTAGTAGTAGCAGTTGTGATCAGTCGTCGTCCAACATTTTCGACGGCTTTGAAAGCTTTGTCGATGATTATTGGAGTGAGTTGGTGAGTATGAGGCCACAACAACAACTAGATGCTACGTTGCAGGGTTACTGTGGAATGGGTAGCAGCGGTGCAGCTTCAACAGAAAGCACTAGCTGGGGTGATACTACCTCTCACCTTCAGGTTTACTCTCCTCTGGTTTCGCCTTACCAGGTTGTCCAACAAGGAATGCTTCATGATATCGCTTGTTTTGAGGAGTCTACCAACTTTGGAGTGCAATAG 942 0.4724 MGRAPCCDKANVKKGPWSPEEDAKLKVYIEHNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYATIGSRWSIIASQLPGRTDNDIKNYWNTRLRKKLLGKQRKEQQAHARPKPLMMKNQTEHLVTPLTQNPTWPAQQYHDPNHGNLPNKVEHQQPYSHTLSSHTINSDYQLLHLEQQPYSASINSATAPLVNNSSSSSCDQSSSNIFDGFESFVDDYWSELVSMRPQQQLDATLQGYCGMGSSGAASTESTSWGDTTSHLQVYSPLVSPYQVVQQGMLHDIACFEESTNFGVQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1969 313 PANTHER OS09G0431300 PROTEIN 1 244 - -
Alju09g1969 313 SMART sant 13 64 IPR001005 -
Alju09g1969 313 SMART sant 67 115 IPR001005 -
Alju09g1969 313 FunFam Transcription factor RAX3 7 68 - -
Alju09g1969 313 CDD SANT 71 113 IPR001005 -
Alju09g1969 313 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Alju09g1969 313 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Alju09g1969 313 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Alju09g1969 313 MobiDBLite consensus disorder prediction 150 177 - -
Alju09g1969 313 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Alju09g1969 313 FunFam Transcription factor MYB36 70 140 - -
Alju09g1969 313 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Alju09g1969 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Alju09g1969 313 CDD SANT 16 62 IPR001005 -
Alju09g1969 313 Gene3D - 70 141 - -
Alju09g1969 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Alju09g1969 313 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1969 Alju-ChrAlju09 43494560 43495708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1969 1 137 MYB Transcription Factor Family AT5G65790 86.957 1.54e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju09g1969 Myb_DNA-binding 1.7e-12 CL0123