Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1967 ATGGGTTTTGGTGATGCTTCTAGTAGCCCTGGCCTTCACCTTGTTCTAGGGTTAGCTCCTACTGGTTCTCCATCCACGGCTCAACATAATAGGAGACCAGCCAAGAGCTCTTGCAGTTTCACGCCAAAAAGTAGTTGTGAGCCATCTCTAACCTTGGCTCTTTCCGCCGAGACTAATTACCGACAAGTCCCCAAAAAGGTTCAGGTGAACAAAGGTTGTGAGGATCCTCTTGACTTTTCTCGCCAGACATCACCACACAGCGCCGTCTCATCCTTCTCTGGCGGCAGAGTGAAAAGGGAGAGAGATCTCTCCGGCGAAGAGGTCGAGGCGGCGGAGAGGGTTTCCTCAAGAGGGAGTGACGAAGACGAAGACGGAACCAATGCCAGAAAGAAGCTCAGACTCACCAAAGAACAATCCGCCTTGCTGGAGGAAAGCTTCAAACAAAACAGCACTCTCAATCCAAAGCAGAAGCAAGCATTAGCCAGGGAGCTAAATCTGAGGCCAAGACAAGTTGAAGTGTGGTTCCAAAATCGGAGAGCCAGGACCAAGCTGAAGCAGACGGAGGTAGACTGCGAGTTGTTAAAGAAATGGTGCGAGACGCTGACGGACGAAAACAGGAGGCTACAGAAGGAGGTGCAAGAGCTGAAGGCGGTCAAGGTAGCCCAACCTCTGTACATGGCGATGCCGGCAGCCACCCTCACCATGTGCCCATCCTGCGAGAGACTGGGCGGGGTCGCCGGCGACGGCTCTTCTAATGACAAGACCGCCTTCTCAATGGCTCCCAAAACCCACCATTTCTACACTCCCTTCTCCAATCCTTCAGCGGCATGCTGA 834 0.53 MGFGDASSSPGLHLVLGLAPTGSPSTAQHNRRPAKSSCSFTPKSSCEPSLTLALSAETNYRQVPKKVQVNKGCEDPLDFSRQTSPHSAVSSFSGGRVKRERDLSGEEVEAAERVSSRGSDEDEDGTNARKKLRLTKEQSALLEESFKQNSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKWCETLTDENRRLQKEVQELKAVKVAQPLYMAMPAATLTMCPSCERLGGVAGDGSSNDKTAFSMAPKTHHFYTPFSNPSAAC 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1967 277 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Alju09g1967 277 Coils Coil 198 218 - -
Alju09g1967 277 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Alju09g1967 277 SUPERFAMILY Homeodomain-like 119 186 IPR009057 -
Alju09g1967 277 MobiDBLite consensus disorder prediction 95 129 - -
Alju09g1967 277 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Alju09g1967 277 MobiDBLite consensus disorder prediction 1 46 - -
Alju09g1967 277 CDD homeodomain 129 186 IPR001356 GO:0003677
Alju09g1967 277 FunFam Homeobox-leucine zipper protein 18 112 190 - -
Alju09g1967 277 Gene3D - 122 190 - -
Alju09g1967 277 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Alju09g1967 277 MobiDBLite consensus disorder prediction 21 46 - -
Alju09g1967 277 Pfam Homeobox associated leucine zipper 185 217 IPR003106 GO:0006355|GO:0043565
Alju09g1967 277 MobiDBLite consensus disorder prediction 73 129 - -
Alju09g1967 277 SMART HOX_1 127 189 IPR001356 GO:0003677
Alju09g1967 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1967 Alju-ChrAlju09 43461587 43462752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1967 1 277 Homeobox Transcription Factor Family AT4G37790 59.794 2.72e-92 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju09g1967 Homeodomain 1.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1967 09 43461587 43462752 Alju12g0337 12 4112640 4113818 CCT