Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1953 ATGAGCCGCTCGCCAAATTCAAATCTTCCCCGTCTGAAGAAACTTTGGCAAAACAAACTAAAATCTTCATTCGATCTTGTTCCTCTTCTCTCTTCCTTCAAGGACATGGAGGACCCAAGCATTTTCGATCAATACCCAGTGGATTGTTTGGCGTACGAGGTTGATGAGTTTCAGGATTTGTCGGGATCCGGCGACAGTTACTCACCTTTCAGCTCCAAAAGAAGCCGTGATGAGTGGTTCCCAGTGGAGAGTCCAGAATCTGTGGCCCAACAAAGAGCAACCAAGCCACTCAGGAGCATCAACAATACTAATAGCTGGACTTCTTGCACCACTTCAATGGCTGATCCCATCGTCCCTTCCAATCATTCTGCTTCTAATTCTTCCTCCCACATCATTTCTTTTGAGAATTCTAATAATAATTCTTCCCCAGATGTCGCTTCAAACCAATTCTACAGCTTGGATTCTAGTACTGTTGTCAAGCCTAAGACCGAGACTGTTTTCTCCCCTGACAACTTGGATTTTAGCGCTCCGTTCTCCATTATTTCTCAACCCACCTATGACCTCAAACCTGATTCCTTTTTGCTCCAACATGAGAAAAAAAAAGCCACCATTGCCAGAAATCCAATTCAAGCTCAAGATCACGTCATGGCCGAAAGAAAACGTAGGGAGAAGCTCAACCAGCGGTTCATTGCTCTTTCCGCCATTCTTCCTGGCCTCAAAAAGATGGATAAGGCTTCAGTCCTAGGAGATGCTATCAACTATGTAAAACAACTGCAGGAGCGAGTGAAAACTCTGAAGGAACAGGTAAACAAGAAAGCAGTGGAAACCGCAGTGTTTGTGAAAAAATCTGTTCTATATGCCGATGATGACGGCTCCTCCTCCGATGAAAATCCCAACAGCCGCTTCGGCCAGCCGCTACCCGAGATCGAAGCAAGAGTTTCCGGCAAGGACGTCCTCCTTAGAATCCACTGCGACAAACAGGATGGATGTTGCGCCACCATACTCTCCCGCTTACAACATCTCAATCTCACTGTCCAGAGTAGCAGCTTCTTGCCCTTCGGGAATACCACTGTTGACATTACTATTGTTGCAAAGATGAATGATGAAGAGTGCGTGACTGCAAAGGATATAGTAAGAAGCCTAAGGCAGGGTTTGACACACTTAAATTAA 1170 0.4556 MSRSPNSNLPRLKKLWQNKLKSSFDLVPLLSSFKDMEDPSIFDQYPVDCLAYEVDEFQDLSGSGDSYSPFSSKRSRDEWFPVESPESVAQQRATKPLRSINNTNSWTSCTTSMADPIVPSNHSASNSSSHIISFENSNNNSSPDVASNQFYSLDSSTVVKPKTETVFSPDNLDFSAPFSIISQPTYDLKPDSFLLQHEKKKATIARNPIQAQDHVMAERKRREKLNQRFIALSAILPGLKKMDKASVLGDAINYVKQLQERVKTLKEQVNKKAVETAVFVKKSVLYADDDGSSSDENPNSRFGQPLPEIEARVSGKDVLLRIHCDKQDGCCATILSRLQHLNLTVQSSSFLPFGNTTVDITIVAKMNDEECVTAKDIVRSLRQGLTHLN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1953 389 SMART finulus 215 264 IPR011598 GO:0046983
Alju09g1953 389 PANTHER BHLH TRANSCRIPTION FACTOR 85 385 - -
Alju09g1953 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Alju09g1953 389 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
Alju09g1953 389 Coils Coil 248 275 - -
Alju09g1953 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 275 IPR036638 GO:0046983
Alju09g1953 389 CDD bHLH_AtNAI1_like 211 283 - -
Alju09g1953 389 Gene3D - 210 280 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1953 Alju-ChrAlju09 43362325 43364021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1953 121 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.636 3.85e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju09g1953 HLH 2.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1953 09 43362325 43364021 Alju12g0352 12 4299902 4301685 CCT